Strain identifier

BacDive ID: 133542

Type strain: Yes

Species: Prevotella aurantiaca

Strain Designation: OMA31

Strain history: M. Sakamoto <-- M. Okamoto OMA31.

NCBI tax ID(s): 1236508 (strain), 596085 (species)

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General

@ref: 29422

BacDive-ID: 133542

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, rod-shaped

description: Prevotella aurantiaca OMA31 is an anaerobe, mesophilic, rod-shaped bacterium that was isolated from human - mouth.

NCBI tax id

NCBI tax idMatching level
1236508strain
596085species

strain history

  • @ref: 67770
  • history: M. Sakamoto <-- M. Okamoto OMA31.

doi: 10.13145/bacdive133542.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Prevotellaceae
  • genus: Prevotella
  • species: Prevotella aurantiaca
  • full scientific name: Prevotella aurantiaca Sakamoto et al. 2010

@ref: 29422

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Prevotellaceae

genus: Prevotella

species: Prevotella aurantiaca

strain designation: OMA31

type strain: yes

Morphology

cell morphology

@refcell lengthcell widthcell shapemotilitygram stainconfidence
294221.6 µm0.65 µmrod-shapedno
69480negative95.163

colony morphology

  • @ref: 61429
  • incubation period: 2 days

pigmentation

  • @ref: 29422
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperature
29422positivegrowth37
61429positivegrowth37
67770positivegrowth37

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
29422anaerobe
61429anaerobe
69480anaerobe93.039

spore formation

@refspore formationconfidence
29422no
69480no91.356
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2942217234glucose+carbon source
2942217306maltose+carbon source
2942237684mannose+carbon source
2942216634raffinose+carbon source
2942217992sucrose+carbon source

metabolite production

  • @ref: 29422
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 29422
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
29422alkaline phosphatase+3.1.3.1
29422gelatinase+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
29422human - mouth
61429Periodontal pocket,periodontitisJapanJPNAsia
67770Human oral cavity

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Mouth

taxonmaps

  • @ref: 69479
  • File name: preview.99_7309.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_295;96_1148;97_4197;98_5363;99_7309&stattab=map
  • Last taxonomy: Prevotella aurantiaca subclade
  • 16S sequence: AB480534
  • Sequence Identity:
  • Total samples: 11788
  • soil counts: 67
  • aquatic counts: 139
  • animal counts: 11479
  • plant counts: 103

Sequence information

16S sequences

  • @ref: 29422
  • description: Prevotella aurantiaca gene for 16S ribosomal RNA, partial sequence
  • accession: AB480534
  • length: 1481
  • database: nuccore
  • NCBI tax ID: 1236508

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Prevotella aurantiaca JCM 157541236508.3wgspatric1236508
66792Prevotella aurantiaca JCM 157542565956594draftimg1236508
67770Prevotella aurantiaca JCM 15754GCA_000614025contigncbi1236508

GC content

@refGC-contentmethod
2942239.7
6777039.7high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno95.163no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes93.039yes
69480spore-formingspore-formingAbility to form endo- or exosporesno91.356yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no97.341yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno95.234yes
69480flagellatedmotile2+Ability to perform flagellated movementno89.5no

External links

@ref: 29422

culture collection no.: JCM 15754, CCUG 57723, KCTC 15073

straininfo link

  • @ref: 91495
  • straininfo: 411214

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19654360Prevotella aurantiaca sp. nov., isolated from the human oral cavity.Sakamoto M, Suzuki N, Okamoto MInt J Syst Evol Microbiol10.1099/ijs.0.012831-02009DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Humans, Molecular Sequence Data, Mouth/*microbiology, Periodontitis/microbiology, Phylogeny, Prevotella/*classification/genetics/*isolation & purification/metabolism, RNA, Ribosomal, 16S/geneticsMetabolism
Pathogenicity28821458Dipeptidyl peptidase IV and quorum sensing signaling in biofilm-related virulence of Prevotella aurantiaca.Fteita D, Musrati AA, Kononen E, Ma X, Gursoy M, Peurla M, Soderling E, Sintim HO, Gursoy UKAnaerobe10.1016/j.anaerobe.2017.08.0092017Bacteroidaceae Infections/*microbiology, Biofilms/drug effects/*growth & development, Dipeptidyl Peptidase 4/*metabolism, Enzyme Activation, Estradiol/pharmacology, Humans, Microbial Viability/drug effects, Prevotella/pathogenicity/*physiology/ultrastructure, *Quorum Sensing, *Signal Transduction, Virulence, Virulence FactorsMetabolism

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29422Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172582828776041
61429Curators of the CCUGhttps://www.ccug.se/strain?id=57723Culture Collection University of Gothenburg (CCUG) (CCUG 57723)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91495Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID411214.1