Strain identifier

BacDive ID: 133539

Type strain: Yes

Species: Winogradskyella exilis

Strain Designation: 022-2-26

Strain history: CIP <- 2009, E. Ivanova, Swinburne Univ., Victoria, Australia: strain 022-2-26

NCBI tax ID(s): 589872 (species)

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General

@ref: 29406

BacDive-ID: 133539

keywords: 16S sequence, Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped

description: Winogradskyella exilis 022-2-26 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from Starfish.

NCBI tax id

  • NCBI tax id: 589872
  • Matching level: species

strain history

  • @ref: 119155
  • history: CIP <- 2009, E. Ivanova, Swinburne Univ., Victoria, Australia: strain 022-2-26

doi: 10.13145/bacdive133539.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Winogradskyella
  • species: Winogradskyella exilis
  • full scientific name: Winogradskyella exilis Ivanova et al. 2010

@ref: 29406

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Winogradskyella

species: Winogradskyella exilis

strain designation: 022-2-26

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangement
29406negative0.8-1.8 µm0.4-0.9 µmrod-shapedyesgliding
119155negativerod-shapedno

pigmentation

  • @ref: 29406
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34006Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
119155CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13
119155CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
29406positivegrowth05-35
29406positiveoptimum23psychrophilic
34006positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
29406positivegrowth06-10alkaliphile
29406positiveoptimum8-8.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29406facultative anaerobe
119155facultative anaerobe

spore formation

  • @ref: 29406
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
29406NaClpositivegrowth0-6 %
29406NaClpositiveoptimum0-6 %

observation

  • @ref: 29406
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
29406581435-dehydro-D-gluconate+carbon source
11915517632nitrate-reduction
11915516301nitrite-reduction

metabolite production

  • @ref: 119155
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
29406alkaline phosphatase+3.1.3.1
29406catalase+1.11.1.6
29406urease+3.5.1.5
119155oxidase-
119155catalase+1.11.1.6
119155urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119155-+++-+++-+++--------

Isolation, sampling and environmental information

isolation

  • @ref: 119155
  • sample type: Starfish
  • geographic location: Sea, South
  • country: China
  • origin.country: CHN
  • continent: Asia
  • isolation date: 1998

taxonmaps

  • @ref: 69479
  • File name: preview.99_134383.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_52097;97_67117;98_89723;99_134383&stattab=map
  • Last taxonomy: Winogradskyella exilis subclade
  • 16S sequence: FJ595484
  • Sequence Identity:
  • Total samples: 223
  • soil counts: 20
  • aquatic counts: 142
  • animal counts: 57
  • plant counts: 4

Safety information

risk assessment

  • @ref: 119155
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 29406
  • description: Winogradskyella exilis strain 022-2-26 16S ribosomal RNA gene, partial sequence
  • accession: FJ595484
  • length: 1514
  • database: nuccore
  • NCBI tax ID: 589872

GC content

  • @ref: 29406
  • GC-content: 30

External links

@ref: 29406

culture collection no.: KMM 6013, CIP 109976

straininfo link

  • @ref: 91493
  • straininfo: 370252

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19700451Winogradskyella exilis sp. nov., isolated from the starfish Stellaster equestris, and emended description of the genus Winogradskyella.Ivanova EP, Christen R, Gorshkova NM, Zhukova NV, Kurilenko VV, Crawford RJ, Mikhailov VVInt J Syst Evol Microbiol10.1099/ijs.0.012476-02009Animals, Base Composition, Base Sequence, Flavobacteriaceae/*classification/genetics/isolation & purification, Lipids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Starfish/*microbiology, Vitamin K 2/analysisGenetics
Phylogeny21984672Winogradskyella aquimaris sp. nov., isolated from seawater.Lee SY, Park S, Oh TK, Yoon JHInt J Syst Evol Microbiol10.1099/ijs.0.034090-02011Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Phenotype, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Species Specificity, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny31976853Mangrovimonas spongiae sp. nov., a novel member of the genus Mangrovimonas isolated from marine sponge.Zhuang L, Lin B, Luo LInt J Syst Evol Microbiol10.1099/ijsem.0.0040062020Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29406Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172581328776041
34006Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7780
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91493Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID370252.1
119155Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109976Collection of Institut Pasteur (CIP 109976)