Strain identifier

BacDive ID: 133538

Type strain: Yes

Species: Aliiglaciecola litoralis

Strain history: N. Tanaka <-- L. A. Romanenko Sd 2-38 (=KMM 3894).

NCBI tax ID(s): 582857 (species)

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General

@ref: 29404

BacDive-ID: 133538

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Aliiglaciecola litoralis NRIC 0754 is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 582857
  • Matching level: species

strain history

  • @ref: 67770
  • history: N. Tanaka <-- L. A. Romanenko Sd 2-38 (=KMM 3894).

doi: 10.13145/bacdive133538.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Aliiglaciecola
  • species: Aliiglaciecola litoralis
  • full scientific name: Aliiglaciecola litoralis (Tanaka et al. 2010) Jean et al. 2013

  • synonyms

    • @ref: 20215
    • synonym: Aestuariibacter litoralis

@ref: 29404

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Aliiglaciecola

species: Aliiglaciecola litoralis

type strain: yes

Morphology

cell morphology

  • @ref: 29404
  • gram stain: negative
  • cell length: 2 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 29404
  • production: no

Culture and growth conditions

culture temp

@refgrowthtypetemperature
29404positivegrowth04-40
29404positiveoptimum30
67770positivegrowth25

culture pH

@refabilitytypepHPH range
29404positivegrowth5.5-10.5alkaliphile
29404positiveoptimum7.25

Physiology and metabolism

oxygen tolerance

  • @ref: 29404
  • oxygen tolerance: aerobe

halophily

  • @ref: 29404
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0.5-6 %

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
294044853esculin+hydrolysis
2940417632nitrate+reduction

enzymes

@refvalueactivityec
29404gelatinase+
29404catalase+1.11.1.6
29404cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.country
29404marine sediment
67770Marine sandy sample collected off shore of the Sea of Japan,at a depth of 3 mRussiaRUS

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_119925.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_28508;97_35927;98_46424;99_119925&stattab=map
  • Last taxonomy: Aliiglaciecola litoralis subclade
  • 16S sequence: AB473549
  • Sequence Identity:
  • Total samples: 120
  • aquatic counts: 116
  • animal counts: 2
  • plant counts: 2

Sequence information

16S sequences

  • @ref: 29404
  • description: Aestuariibacter litoralis gene for 16S ribosomal RNA, partial sequence, strain: Sd 2-38 (= KMM 3894)
  • accession: AB473549
  • length: 1504
  • database: nuccore
  • NCBI tax ID: 582857

GC content

@refGC-contentmethod
2940443
6777043high performance liquid chromatography (HPLC)

External links

@ref: 29404

culture collection no.: NRIC 0754, JCM 15896, KMM 3894

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19651716Aestuariibacter litoralis sp. nov., isolated from a sandy sediment of the Sea of Japan.Tanaka N, Romanenko LA, Frolova GM, Mikhailov VVInt J Syst Evol Microbiol10.1099/ijs.0.012435-02009Alteromonadaceae/*classification/genetics/physiology, Geologic Sediments/*microbiology, Japan, Molecular Sequence Data, Oceans and Seas, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, RNA, *Water MicrobiologyGenetics
Phylogeny23315410Reclassification of [Glaciecola] lipolytica and [Aestuariibacter] litoralis in Aliiglaciecola gen. nov., as Aliiglaciecola lipolytica comb. nov. and Aliiglaciecola litoralis comb. nov., respectively.Jean WD, Hsu CY, Huang SP, Chen JS, Lin S, Su MH, Shieh WYInt J Syst Evol Microbiol10.1099/ijs.0.045625-02013Alteromonadaceae/*classification/genetics/growth & development, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Nitrates/metabolism, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNATranscriptome
Phylogeny25216983Aliiglaciecola coringensis sp. nov., isolated from a water sample collected from mangrove forest in Coringa, Andhra Pradesh, India.Gupta V, Sharma G, Srinivas TN, Anil Kumar PAntonie Van Leeuwenhoek10.1007/s10482-014-0279-02014Aerobiosis, Alteromonadaceae/*classification/*isolation & purification, Bacterial Typing Techniques, Base Composition, Chromatography, Thin Layer, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, India, Locomotion, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, *Water MicrobiologyGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29404Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172581128776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/