Strain identifier

BacDive ID: 133533

Type strain: Yes

Species: Halomonas xinjiangensis

NCBI tax ID(s): 1166948 (species)

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General

@ref: 29363

BacDive-ID: 133533

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Halomonas xinjiangensis CCTCC AB 208329 is an aerobe, Gram-negative, motile bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1166948
  • Matching level: species

doi: 10.13145/bacdive133533.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Halomonadaceae
  • genus: Halomonas
  • species: Halomonas xinjiangensis
  • full scientific name: Halomonas xinjiangensis Guan et al. 2010

  • synonyms

    • @ref: 20215
    • synonym: Litchfieldella xinjiangensis

@ref: 29363

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Halomonas

species: Halomonas xinjiangensis

type strain: yes

Morphology

cell morphology

  • @ref: 29363
  • gram stain: negative
  • cell length: 1.6 µm
  • cell width: 0.8 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 29363
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
29363positivegrowth15-50
29363positiveoptimum37mesophilic

culture pH

@refabilitytypepHPH range
29363positivegrowth06-09alkaliphile
29363positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 29363
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
29363NaClpositivegrowth0-20 %
29363NaClpositiveoptimum11.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2936322653asparagine+carbon source
2936328757fructose+carbon source
2936328260galactose+carbon source
2936337684mannose+carbon source
2936326546rhamnose+carbon source
2936317822serine+carbon source
2936327082trehalose+carbon source
293634853esculin+hydrolysis
2936317632nitrate+reduction

enzymes

  • @ref: 29363
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

  • @ref: 29363
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_3566.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_1857;97_2228;98_2734;99_3566&stattab=map
  • Last taxonomy: Halomonas xinjiangensis subclade
  • 16S sequence: EU822512
  • Sequence Identity:
  • Total samples: 617
  • soil counts: 73
  • aquatic counts: 427
  • animal counts: 97
  • plant counts: 20

Sequence information

16S sequences

  • @ref: 29363
  • description: Halomonas xinjiangensis strain TRM 0175 16S ribosomal RNA gene, complete sequence
  • accession: EU822512
  • length: 1420
  • database: nuccore
  • NCBI tax ID: 1166948

GC content

  • @ref: 29363
  • GC-content: 60

External links

@ref: 29363

culture collection no.: CCTCC AB 208329, KCTC 22608, TRM 0175

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19651733Halomonas xinjiangensis sp. nov., a halotolerant bacterium isolated from a salt lake.Guan TW, Xiao J, Zhao K, Luo XX, Zhang XP, Zhang LLInt J Syst Evol Microbiol10.1099/ijs.0.011593-02009Base Composition, China, DNA, Bacterial/chemistry, Halomonas/*classification/isolation & purification/physiology, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Salts/chemistry, Sequence Homology, Nucleic Acid, *Soil Microbiology, *Water MicrobiologyGenetics
Phylogeny23811134Halomonas zincidurans sp. nov., a heavy-metal-tolerant bacterium isolated from the deep-sea environment.Xu L, Xu XW, Meng FX, Huo YY, Oren A, Yang JY, Wang CSInt J Syst Evol Microbiol10.1099/ijs.0.051656-02013Atlantic Ocean, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Halomonas/*classification/genetics/isolation & purification, Metals, Heavy, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Ubiquinone/chemistryGenetics
Genetics25481275Investigation of mercury tolerance in Chromohalobacter israelensis DSM 6768T and Halomonas zincidurans B6T by comparative genomics with Halomonas xinjiangensis TRM 0175T.Zhou P, Huo YY, Xu L, Wu YH, Meng FX, Wang CS, Xu XWMar Genomics10.1016/j.margen.2014.11.0082014Atlantic Ocean, Base Sequence, Chromohalobacter/*drug effects/*genetics, Dose-Response Relationship, Drug, Drug Tolerance/*genetics, Halomonas/*drug effects/*genetics, Mercury/*toxicity, Microbial Sensitivity Tests, Molecular Sequence Annotation, Molecular Sequence Data, Sequence Analysis, DNA, Species SpecificityPathogenicity
Phylogeny31535966Halomonas radicis sp. nov., isolated from Arthrocnemum macrostachyum growing in the Odiel marshes(Spain) and emended descriptions of Halomonas xinjiangensis and Halomonas zincidurans.Navarro-Torre S, Carro L, Rodriguez-Llorente ID, Pajuelo E, Caviedes MA, Igual JM, Klenk HP, Montero-Calasanz MDCInt J Syst Evol Microbiol10.1099/ijsem.0.0037422020Bacterial Typing Techniques, Base Composition, Chenopodiaceae/*microbiology, DNA, Bacterial/genetics, Endophytes/classification/isolation & purification, Fatty Acids/chemistry, Halomonas/*classification/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Salt-Tolerant Plants/microbiology, Sequence Analysis, DNA, Spain, *WetlandsEnzymology

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29363Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172577428776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/