Strain identifier
BacDive ID: 133532
Type strain: 
Species: Acidocella aluminiidurans
Strain Designation: AL46
Strain history: <- K. Mori, NBRC; NBRC 104303 <- N. Bao Ve and T. Aizawa, Can Tho University, Vietnam; AL46
NCBI tax ID(s): 472056 (species)
version 8.1 (current version)
General
@ref: 64731
BacDive-ID: 133532
DSM-Number: 108313
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped
description: Acidocella aluminiidurans AL46 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Waterweed from highly acidic swamp.
NCBI tax id
- NCBI tax id: 472056
- Matching level: species
strain history
- @ref: 64731
- history: <- K. Mori, NBRC; NBRC 104303 <- N. Bao Ve and T. Aizawa, Can Tho University, Vietnam; AL46
doi: 10.13145/bacdive133532.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acidocella
- species: Acidocella aluminiidurans
- full scientific name: Acidocella aluminiidurans Kimoto et al. 2010
@ref: 64731
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Acidocella
species: Acidocella aluminiidurans
full scientific name: Acidocella aluminiidurans Kimoto et al. 2010
strain designation: AL46
type strain: yes
Morphology
cell morphology
- @ref: 29361
- gram stain: negative
- cell length: 1.4 µm
- cell width: 0.3 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 29361
- production: yes
Culture and growth conditions
culture medium
- @ref: 64731
- name: ACIDIPHILIUM MEDIUM (DSMZ Medium 269)
- growth: yes
- link: https://mediadive.dsmz.de/medium/269
- composition: Name: ACIDIPHILIUM MEDIUM (DSMZ Medium 269; with strain-specific modifications) Composition: (NH4)2SO4 2.0 g/l D-Glucose 1.0 g/l Trypticase soy broth 1.0 g/l MgSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l Yeast extract 0.3 g/l KCl 0.1 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 64731 | positive | growth | 28 | mesophilic |
| 29361 | positive | growth | 17-42 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29361 | positive | growth | 03-07 | acidophile |
| 29361 | positive | optimum | 4.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 29361
- oxygen tolerance: aerobe
spore formation
- @ref: 29361
- spore formation: no
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29361 | 16449 | alanine | + | carbon source |
| 29361 | 23652 | dextrin | + | carbon source |
| 29361 | 29987 | glutamate | + | carbon source |
| 29361 | 28087 | glycogen | + | carbon source |
| 29361 | 30031 | succinate | + | carbon source |
| 29361 | 27248 | urocanic acid | + | carbon source |
enzymes
- @ref: 29361
- value: gelatinase
- activity: +
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 29361 | Waterweed from highly acidic swamp | ||||
| 64731 | Torpedo grass, Panicum repens | Can Tho | Vietnam | VNM | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Wetland (Swamp) |
| #Host | #Plants | #Aquatic plant |
taxonmaps
- @ref: 69479
- File name: preview.99_6750.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_3146;97_3854;98_4978;99_6750&stattab=map
- Last taxonomy: Acidocella
- 16S sequence: AB362219
- Sequence Identity:
- Total samples: 1441
- soil counts: 285
- aquatic counts: 558
- animal counts: 371
- plant counts: 227
Safety information
risk assessment
- @ref: 64731
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 29361 | Acidocella aluminiidurans gene for 16S rRNA, partial sequence | AB362219 | 1474 | nuccore | 472056 |
| 64731 | Acidocella aluminiidurans gene for 16S rRNA, partial sequence, strain: NBRC 104303 | AB682174 | 1410 | ena | 472056 |
GC content
- @ref: 64731
- GC-content: 65.6
External links
@ref: 64731
culture collection no.: NBRC 104303, DSM 108313, VTCC D9-1
straininfo link
- @ref: 91490
- straininfo: 404595
literature
- topic: Phylogeny
- Pubmed-ID: 19656936
- title: Acidocella aluminiidurans sp. nov., an aluminium-tolerant bacterium isolated from Panicum repens grown in a highly acidic swamp in actual acid sulfate soil area of Vietnam.
- authors: Kimoto KI, Aizawa T, Urai M, Bao Ve N, Suzuki KI, Nakajima M, Sunairi M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.011569-0
- year: 2009
- mesh: Acetobacteraceae/*classification/drug effects/genetics/*isolation & purification, Aluminum/*pharmacology, Bacterial Typing Techniques, Base Composition, DNA, Ribosomal/analysis/genetics, Fatty Acids/analysis, Genes, rRNA, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, *Panicum/growth & development/microbiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil/*analysis, Species Specificity, Sulfates/analysis, Vietnam, *Wetlands
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 29361 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25772 | 28776041 | |
| 64731 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-108313 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108313) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 91490 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404595.1 |