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Strain identifier

BacDive ID: 133532

Type strain: Yes

Species: Acidocella aluminiidurans

Strain Designation: AL46

Strain history: <- K. Mori, NBRC; NBRC 104303 <- N. Bao Ve and T. Aizawa, Can Tho University, Vietnam; AL46

NCBI tax ID(s): 472056 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 64731

BacDive-ID: 133532

DSM-Number: 108313

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Acidocella aluminiidurans AL46 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Waterweed from highly acidic swamp.

NCBI tax id

  • NCBI tax id: 472056
  • Matching level: species

strain history: <- K. Mori, NBRC; NBRC 104303 <- N. Bao Ve and T. Aizawa, Can Tho University, Vietnam; AL46

doi: 10.13145/bacdive133532.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acidocella
  • species: Acidocella aluminiidurans
  • full scientific name: Acidocella aluminiidurans Kimoto et al. 2010

@ref: 64731

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Acidocella

species: Acidocella aluminiidurans

full scientific name: Acidocella aluminiidurans Kimoto et al. 2010

strain designation: AL46

type strain: yes

Morphology

cell morphology

  • @ref: 29361
  • gram stain: negative
  • cell length: 1.4 µm
  • cell width: 0.3 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 29361
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 64731
  • name: ACIDIPHILIUM MEDIUM (DSMZ Medium 269)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/269
  • composition: Name: ACIDIPHILIUM MEDIUM (DSMZ Medium 269; with strain-specific modifications) Composition: (NH4)2SO4 2.0 g/l D-Glucose 1.0 g/l Trypticase soy broth 1.0 g/l MgSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l Yeast extract 0.3 g/l KCl 0.1 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
64731positivegrowth28mesophilic
29361positivegrowth17-42

culture pH

@refabilitytypepHPH range
29361positivegrowth03-07acidophile
29361positiveoptimum4.5

Physiology and metabolism

oxygen tolerance

  • @ref: 29361
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29361
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2936116449alanine+carbon source
2936123652dextrin+carbon source
2936129987glutamate+carbon source
2936128087glycogen+carbon source
2936130031succinate+carbon source
2936127248urocanic acid+carbon source

enzymes

  • @ref: 29361
  • value: gelatinase
  • activity: +

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
29361Waterweed from highly acidic swamp
64731Torpedo grass, Panicum repensCan ThoVietnamVNMAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Wetland (Swamp)
#Host#Plants#Aquatic plant

taxonmaps

  • @ref: 69479
  • File name: preview.99_6750.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_3146;97_3854;98_4978;99_6750&stattab=map
  • Last taxonomy: Acidocella
  • 16S sequence: AB362219
  • Sequence Identity:
  • Total samples: 1441
  • soil counts: 285
  • aquatic counts: 558
  • animal counts: 371
  • plant counts: 227

Safety information

risk assessment

  • @ref: 64731
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
29361Acidocella aluminiidurans gene for 16S rRNA, partial sequenceAB3622191474nuccore472056
64731Acidocella aluminiidurans gene for 16S rRNA, partial sequence, strain: NBRC 104303AB6821741410ena472056

GC content

  • @ref: 64731
  • GC-content: 65.6

External links

@ref: 64731

culture collection no.: NBRC 104303, DSM 108313, VTCC D9-1

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/853815

literature

  • topic: Phylogeny
  • Pubmed-ID: 19656936
  • title: Acidocella aluminiidurans sp. nov., an aluminium-tolerant bacterium isolated from Panicum repens grown in a highly acidic swamp in actual acid sulfate soil area of Vietnam.
  • authors: Kimoto KI, Aizawa T, Urai M, Bao Ve N, Suzuki KI, Nakajima M, Sunairi M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.011569-0
  • year: 2009
  • mesh: Acetobacteraceae/*classification/drug effects/genetics/*isolation & purification, Aluminum/*pharmacology, Bacterial Typing Techniques, Base Composition, DNA, Ribosomal/analysis/genetics, Fatty Acids/analysis, Genes, rRNA, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, *Panicum/growth & development/microbiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil/*analysis, Species Specificity, Sulfates/analysis, Vietnam, *Wetlands
  • topic2: Genetics

Reference

@idauthorstitledoi/urljournalpubmedID_cross_referencecatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2577210.1099/ijs.0.011569-019656936
29361Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172877604125772
64731Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108313Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108313)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/