Strain identifier
BacDive ID: 133531
Type strain: 
Species: Dehalogenimonas lykanthroporepellens
Strain Designation: BL-DC-9
NCBI tax ID(s): 552810 (species)
version 8.1 (current version)
General
@ref: 29357
BacDive-ID: 133531
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative, coccus-shaped
description: Dehalogenimonas lykanthroporepellens BL-DC-9 is an anaerobe, Gram-negative, coccus-shaped bacterium that was isolated from freshwater .
NCBI tax id
- NCBI tax id: 552810
- Matching level: species
doi: 10.13145/bacdive133531.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/chloroflexota
- domain: Bacteria
- phylum: Chloroflexota
- class: Dehalococcoidia
- order: Dehalococcoidales
- family: Dehalococcoidaceae
- genus: Dehalogenimonas
- species: Dehalogenimonas lykanthroporepellens
- full scientific name: Dehalogenimonas lykanthroporepellens Moe et al. 2009
@ref: 29357
domain: Bacteria
phylum: Chloroflexi
class: Dehalococcoidia
order: Dehalococcoidales
family: Dehalococcoidaceae
genus: Dehalogenimonas
species: Dehalogenimonas lykanthroporepellens
strain designation: BL-DC-9
type strain: yes
Morphology
cell morphology
- @ref: 29357
- gram stain: negative
- cell shape: coccus-shaped
- motility: no
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29357 | positive | growth | 20-34 | |
| 29357 | positive | optimum | 31 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 29357 | positive | growth | 06-08 |
| 29357 | positive | optimum | 7-7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 29357
- oxygen tolerance: anaerobe
spore formation
- @ref: 29357
- spore formation: no
Isolation, sampling and environmental information
isolation
- @ref: 29357
- sample type: freshwater (river, lake, pond)
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Aquatic | #Pond (small) |
| #Environmental | #Aquatic | #River (Creek) |
taxonmaps
- @ref: 69479
- File name: preview.99_3846.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_427;96_1975;97_2374;98_2930;99_3846&stattab=map
- Last taxonomy: Dehalogenimonas lykanthroporepellens subclade
- 16S sequence: EU679419
- Sequence Identity:
- Total samples: 2037
- soil counts: 502
- aquatic counts: 1481
- animal counts: 29
- plant counts: 25
Sequence information
16S sequences
- @ref: 29357
- description: Chloroflexi bacterium BL-DC-9 16S ribosomal RNA gene, partial sequence
- accession: EU679419
- length: 1421
- database: nuccore
- NCBI tax ID: 552811
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Dehalogenimonas lykanthroporepellens BL-DC-9 | GCA_000143165 | complete | ncbi | 552811 |
| 66792 | Dehalogenimonas lykanthroporepellens BL-DC-9 | 552811.9 | complete | patric | 552811 |
| 66792 | Dehalogenimonas lykanthroporepellens BL-DC-9 | 648028022 | complete | img | 552811 |
GC content
- @ref: 29357
- GC-content: 53.8
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 93.165 | yes |
| flagellated | no | 98.775 | yes |
| gram-positive | no | 94.15 | yes |
| anaerobic | yes | 98.893 | no |
| aerobic | no | 97.818 | yes |
| halophile | no | 85.828 | no |
| spore-forming | no | 93.724 | no |
| thermophile | yes | 50.859 | yes |
| glucose-util | yes | 77.478 | no |
| glucose-ferment | no | 63.954 | no |
External links
@ref: 29357
culture collection no.: ATCC BAA 1523, JCM 15061
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19625421 | Dehalogenimonas lykanthroporepellens gen. nov., sp. nov., a reductively dehalogenating bacterium isolated from chlorinated solvent-contaminated groundwater. | Moe WM, Yan J, Nobre MF, da Costa MS, Rainey FA | Int J Syst Evol Microbiol | 10.1099/ijs.0.011502-0 | 2009 | Chloroflexi/classification/genetics/*isolation & purification/*metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Fresh Water/*microbiology, Hydrocarbons, Chlorinated/*metabolism, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Water Pollutants, Chemical/metabolism | Metabolism |
| Genetics | 22768368 | Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to "Dehalococcoides" strains. | Siddaramappa S, Challacombe JF, Delano SF, Green LD, Daligault H, Bruce D, Detter C, Tapia R, Han S, Goodwin L, Han J, Woyke T, Pitluck S, Pennacchio L, Nolan M, Land M, Chang YJ, Kyrpides NC, Ovchinnikova G, Hauser L, Lapidus A, Yan J, Bowman KS, da Costa MS, Rainey FA, Moe WM | Stand Genomic Sci | 10.4056/sigs.2806097 | 2012 | ||
| 23046725 | Dehalogenimonas spp. can Reductively Dehalogenate High Concentrations of 1,2-Dichloroethane, 1,2-Dichloropropane, and 1,1,2-Trichloroethane. | Maness AD, Bowman KS, Yan J, Rainey FA, Moe WM | AMB Express | 10.1186/2191-0855-2-54 | 2012 | |||
| Metabolism | 24673292 | Dehalogenimonas lykanthroporepellens BL-DC-9T simultaneously transcribes many rdhA genes during organohalide respiration with 1,2-DCA, 1,2-DCP, and 1,2,3-TCP as electron acceptors. | Mukherjee K, Bowman KS, Rainey FA, Siddaramappa S, Challacombe JF, Moe WM | FEMS Microbiol Lett | 10.1111/1574-6968.12434 | 2014 | Bacterial Proteins/*genetics/metabolism, Biotransformation, Chloroflexi/*enzymology/genetics/metabolism, Electron Transport, *Gene Expression Regulation, Bacterial, Hydrocarbons, Chlorinated/chemistry/*metabolism, Molecular Structure, Multigene Family, Oxidoreductases/*genetics/metabolism | Enzymology |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29357 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25769 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |