Strain identifier

BacDive ID: 133525

Type strain: Yes

Species: Psychrobacter piscatorii

Strain Designation: T-3-2

Strain history: CIP <- 2016, JCM <- 2008, I. Yumoto, Hokaido Univ., Sapporo, Japan: strain T-3-2

NCBI tax ID(s): 554343 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 29328

BacDive-ID: 133525

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, ovoid-shaped

description: Psychrobacter piscatorii T-3-2 is an aerobe, Gram-negative, ovoid-shaped bacterium that was isolated from Drain of a fish-processing plant.

NCBI tax id

  • NCBI tax id: 554343
  • Matching level: species

strain history

@refhistory
67770I. Yumoto T-3-2.
121839CIP <- 2016, JCM <- 2008, I. Yumoto, Hokaido Univ., Sapporo, Japan: strain T-3-2

doi: 10.13145/bacdive133525.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Psychrobacter
  • species: Psychrobacter piscatorii
  • full scientific name: Psychrobacter piscatorii Yumoto et al. 2010

@ref: 29328

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter piscatorii

strain designation: T-3-2

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
29328negative1.45 µm1 µmovoid-shapedno
121839negativerod-shapedno

pigmentation

  • @ref: 29328
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41742MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121839CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
29328positivegrowth0-30
29328positiveoptimum25mesophilic
41742positivegrowth25mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 29328
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29328
  • spore formation: no

halophily

  • @ref: 29328
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-12 %

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2932830089acetate+carbon source
2932822599arabinose+carbon source
2932825115malate+carbon source
2932815361pyruvate+carbon source
2932830031succinate+carbon source

metabolite production

  • @ref: 29328
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
29328catalase+1.11.1.6
29328cytochrome oxidase+1.9.3.1
29328urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
67770Drain of a fish-processing plant
121839Drain of a fish-processing plantHokkaidoJapanJPNAsia

Safety information

risk assessment

  • @ref: 121839
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 29328
  • description: Psychrobacter piscatorii gene for 16S rRNA, partial sequence
  • accession: AB453700
  • length: 1510
  • database: nuccore
  • NCBI tax ID: 554343

GC content

@refGC-contentmethod
2932843.9
6777043.9high performance liquid chromatography (HPLC)

External links

@ref: 29328

culture collection no.: JCM 15603, NCIMB 14510, CIP 110995

straininfo link

  • @ref: 91487
  • straininfo: 413152

literature

  • topic: Phylogeny
  • Pubmed-ID: 19648327
  • title: Psychrobacter piscatorii sp. nov., a psychrotolerant bacterium exhibiting high catalase activity isolated from an oxidative environment.
  • authors: Yumoto I, Hirota K, Kimoto H, Nodasaka Y, Matsuyama H, Yoshimune K
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.010959-0
  • year: 2009
  • mesh: Animals, Bacterial Proteins/*metabolism, Base Composition, Catalase/*metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Fishes, Food Handling, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, Psychrobacter/*classification/enzymology/genetics/*isolation & purification, RNA, Ribosomal, 16S/genetics, Sewage/*microbiology
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29328Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172574028776041
41742Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34602
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
91487Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID413152.1
121839Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110995Collection of Institut Pasteur (CIP 110995)