Strain identifier

BacDive ID: 133525

Type strain: Yes

Species: Psychrobacter piscatorii

Strain Designation: T-3-2

Strain history: I. Yumoto T-3-2.

NCBI tax ID(s): 554343 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 29328

BacDive-ID: 133525

keywords: aerobe, Bacteria, 16S sequence, Gram-negative, genome sequence, ovoid-shaped

description: Psychrobacter piscatorii T-3-2 is an aerobe, Gram-negative, ovoid-shaped Proteobacterium that was isolated from Drain of a fish-processing plant.

NCBI tax id

  • NCBI tax id: 554343
  • Matching level: species

strain history: I. Yumoto T-3-2.

doi: 10.13145/bacdive133525.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Psychrobacter
  • species: Psychrobacter piscatorii
  • full scientific name: Psychrobacter piscatorii Yumoto et al. 2010

@ref: 29328

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter piscatorii

strain designation: T-3-2

type strain: yes

Morphology

cell morphology

  • @ref: 29328
  • gram stain: negative
  • cell length: 1.45 µm
  • cell width: 1 µm
  • cell shape: ovoid-shaped
  • motility: no

pigmentation

  • @ref: 29328
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 41742
  • name: MEDIUM 72- for trypto casein soja agar
  • growth: yes
  • composition: Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
29328positivegrowth0-30
29328positiveoptimum25mesophilic
41742positivegrowth25mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 29328
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29328
  • spore formation: no

halophily

  • @ref: 29328
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-12 %

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2932830089acetate+carbon source
2932822599arabinose+carbon source
2932825115malate+carbon source
2932815361pyruvate+carbon source
2932830031succinate+carbon source

metabolite production

  • @ref: 29328
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
29328catalase+1.11.1.6
29328cytochrome oxidase+1.9.3.1
29328urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Drain of a fish-processing plant

Sequence information

16S sequences

  • @ref: 29328
  • description: Psychrobacter piscatorii gene for 16S rRNA, partial sequence
  • accession: AB453700
  • length: 1510
  • database: nuccore
  • NCBI tax ID: 554343

GC content

@refGC-contentmethod
2932843.9
6777043.9high performance liquid chromatography (HPLC)

External links

@ref: 29328

culture collection no.: JCM 15603, NCIMB 14510, CIP 110995

straininfo link

@refpassport
20218http://www.straininfo.net/strains/849743
20218http://www.straininfo.net/strains/849744

Reference

@idauthorstitledoi/urljournalpubmedID_cross_reference
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2574010.1099/ijs.0.010959-019648327
29328Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172877604125740
41742Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34602
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/