Strain identifier
BacDive ID: 133525
Type strain: 
Species: Psychrobacter piscatorii
Strain Designation: T-3-2
Strain history: I. Yumoto T-3-2.
NCBI tax ID(s): 554343 (species)
version 6 (current version)
General
@ref: 29328
BacDive-ID: 133525
keywords: aerobe, Bacteria, 16S sequence, Gram-negative, genome sequence, ovoid-shaped
description: Psychrobacter piscatorii T-3-2 is an aerobe, Gram-negative, ovoid-shaped Proteobacterium that was isolated from Drain of a fish-processing plant.
NCBI tax id
- NCBI tax id: 554343
- Matching level: species
strain history: I. Yumoto T-3-2.
doi: 10.13145/bacdive133525.20211221.6
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Psychrobacter
- species: Psychrobacter piscatorii
- full scientific name: Psychrobacter piscatorii Yumoto et al. 2010
@ref: 29328
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Psychrobacter
species: Psychrobacter piscatorii
strain designation: T-3-2
type strain: yes
Morphology
cell morphology
- @ref: 29328
- gram stain: negative
- cell length: 1.45 µm
- cell width: 1 µm
- cell shape: ovoid-shaped
- motility: no
pigmentation
- @ref: 29328
- production: yes
Culture and growth conditions
culture medium
- @ref: 41742
- name: MEDIUM 72- for trypto casein soja agar
- growth: yes
- composition: Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29328 | positive | growth | 0-30 | |
| 29328 | positive | optimum | 25 | mesophilic |
| 41742 | positive | growth | 25 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 29328
- oxygen tolerance: aerobe
spore formation
- @ref: 29328
- spore formation: no
halophily
- @ref: 29328
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-12 %
observation
- @ref: 67770
- observation: quinones: Q-8
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29328 | 30089 | acetate | + | carbon source |
| 29328 | 22599 | arabinose | + | carbon source |
| 29328 | 25115 | malate | + | carbon source |
| 29328 | 15361 | pyruvate | + | carbon source |
| 29328 | 30031 | succinate | + | carbon source |
metabolite production
- @ref: 29328
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: yes
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29328 | catalase | + | 1.11.1.6 |
| 29328 | cytochrome oxidase | + | 1.9.3.1 |
| 29328 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Drain of a fish-processing plant
Sequence information
16S sequences
- @ref: 29328
- description: Psychrobacter piscatorii gene for 16S rRNA, partial sequence
- accession: AB453700
- length: 1510
- database: nuccore
- NCBI tax ID: 554343
GC content
| @ref | GC-content | method |
|---|---|---|
| 29328 | 43.9 | |
| 67770 | 43.9 | high performance liquid chromatography (HPLC) |
External links
@ref: 29328
culture collection no.: JCM 15603, NCIMB 14510, CIP 110995
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/849743 |
| 20218 | http://www.straininfo.net/strains/849744 |
Reference
| @id | authors | title | doi/url | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 25740 | 10.1099/ijs.0.010959-0 | 19648327 | ||||
| 29328 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28776041 | 25740 | |
| 41742 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/34602 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |