Strain identifier
BacDive ID: 133525
Type strain:
Species: Psychrobacter piscatorii
Strain Designation: T-3-2
Strain history: CIP <- 2016, JCM <- 2008, I. Yumoto, Hokaido Univ., Sapporo, Japan: strain T-3-2
NCBI tax ID(s): 554343 (species)
General
@ref: 29328
BacDive-ID: 133525
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, ovoid-shaped
description: Psychrobacter piscatorii T-3-2 is an aerobe, Gram-negative, ovoid-shaped bacterium that was isolated from Drain of a fish-processing plant.
NCBI tax id
- NCBI tax id: 554343
- Matching level: species
strain history
@ref | history |
---|---|
67770 | I. Yumoto T-3-2. |
121839 | CIP <- 2016, JCM <- 2008, I. Yumoto, Hokaido Univ., Sapporo, Japan: strain T-3-2 |
doi: 10.13145/bacdive133525.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Psychrobacter
- species: Psychrobacter piscatorii
- full scientific name: Psychrobacter piscatorii Yumoto et al. 2010
@ref: 29328
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Psychrobacter
species: Psychrobacter piscatorii
strain designation: T-3-2
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility |
---|---|---|---|---|---|
29328 | negative | 1.45 µm | 1 µm | ovoid-shaped | no |
121839 | negative | rod-shaped | no |
pigmentation
- @ref: 29328
- production: yes
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
41742 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
121839 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
29328 | positive | growth | 0-30 | |
29328 | positive | optimum | 25 | mesophilic |
41742 | positive | growth | 25 | mesophilic |
67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 29328
- oxygen tolerance: aerobe
spore formation
- @ref: 29328
- spore formation: no
halophily
- @ref: 29328
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-12 %
observation
- @ref: 67770
- observation: quinones: Q-8
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29328 | 30089 | acetate | + | carbon source |
29328 | 22599 | arabinose | + | carbon source |
29328 | 25115 | malate | + | carbon source |
29328 | 15361 | pyruvate | + | carbon source |
29328 | 30031 | succinate | + | carbon source |
metabolite production
- @ref: 29328
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: yes
enzymes
@ref | value | activity | ec |
---|---|---|---|
29328 | catalase | + | 1.11.1.6 |
29328 | cytochrome oxidase | + | 1.9.3.1 |
29328 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
67770 | Drain of a fish-processing plant | ||||
121839 | Drain of a fish-processing plant | Hokkaido | Japan | JPN | Asia |
Safety information
risk assessment
- @ref: 121839
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 29328
- description: Psychrobacter piscatorii gene for 16S rRNA, partial sequence
- accession: AB453700
- length: 1510
- database: nuccore
- NCBI tax ID: 554343
GC content
@ref | GC-content | method |
---|---|---|
29328 | 43.9 | |
67770 | 43.9 | high performance liquid chromatography (HPLC) |
External links
@ref: 29328
culture collection no.: JCM 15603, NCIMB 14510, CIP 110995
straininfo link
- @ref: 91487
- straininfo: 413152
literature
- topic: Phylogeny
- Pubmed-ID: 19648327
- title: Psychrobacter piscatorii sp. nov., a psychrotolerant bacterium exhibiting high catalase activity isolated from an oxidative environment.
- authors: Yumoto I, Hirota K, Kimoto H, Nodasaka Y, Matsuyama H, Yoshimune K
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.010959-0
- year: 2009
- mesh: Animals, Bacterial Proteins/*metabolism, Base Composition, Catalase/*metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Fishes, Food Handling, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, Psychrobacter/*classification/enzymology/genetics/*isolation & purification, RNA, Ribosomal, 16S/genetics, Sewage/*microbiology
- topic2: Metabolism
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed | catalogue |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
29328 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25740 | 28776041 | |
41742 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/34602 | ||||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
91487 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID413152.1 | |||
121839 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110995 | Collection of Institut Pasteur (CIP 110995) |