Strain identifier

BacDive ID: 133506

Type strain: Yes

Species: Marinobacter szutsaonensis

Strain Designation: NTU-104

Strain history: Y.-T. Shyu NTU-104.

NCBI tax ID(s): 485258 (species)

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General

@ref: 29224

BacDive-ID: 133506

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Marinobacter szutsaonensis NTU-104 is an aerobe, Gram-negative, motile bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 485258
  • Matching level: species

strain history

  • @ref: 67770
  • history: Y.-T. Shyu NTU-104.

doi: 10.13145/bacdive133506.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter szutsaonensis
  • full scientific name: Marinobacter szutsaonensis Wang et al. 2009

@ref: 29224

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter szutsaonensis

strain designation: NTU-104

type strain: yes

Morphology

cell morphology

  • @ref: 29224
  • gram stain: negative
  • cell length: 1.1 µm
  • cell width: 0.45 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 29224
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
29224positivegrowth10-50
29224positiveoptimum35-40
67770positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
29224positivegrowth6.0-8.5alkaliphile
29224positiveoptimum7.5-8.0

Physiology and metabolism

oxygen tolerance

  • @ref: 29224
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29224
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
29224NaClpositivegrowth0-20 %
29224NaClpositiveoptimum5 %

observation

  • @ref: 67770
  • observation: quinones: Q-9

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2922430089acetate+carbon source
2922416449alanine+carbon source
2922422599arabinose+carbon source
2922417234glucose+carbon source
2922425115malate+carbon source
2922417306maltose+carbon source
2922429864mannitol+carbon source
2922437684mannose+carbon source
2922430031succinate+carbon source
2922417992sucrose+carbon source
292244853esculin+hydrolysis
2922417632nitrate+reduction

enzymes

@refvalueactivityec
29224catalase+1.11.1.6
29224gelatinase+
29224cytochrome oxidase+1.9.3.1
29224urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample type
29224soil
67770Szutsao, a discarded salt field located in southern Taiwan

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_8906.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_693;97_2189;98_2686;99_8906&stattab=map
  • Last taxonomy: Marinobacter
  • 16S sequence: LC508801
  • Sequence Identity:
  • Total samples: 56
  • soil counts: 5
  • aquatic counts: 49
  • animal counts: 2

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
29224Marinobacter szutsaonensis strain NTU-104 16S ribosomal RNA gene, partial sequenceEU1647781435nuccore485258
67770Marinobacter szutsaonensis JCM 15751 gene for 16S ribosomal RNA, partial sequenceLC5088011462ena485258

GC content

@refGC-contentmethod
2922456.5
6777056.5high performance liquid chromatography (HPLC)

External links

@ref: 29224

culture collection no.: BCRC 17809, CGMCC 1.7011, JCM 15751

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19622658Marinobacter szutsaonensis sp. nov., isolated from a solar saltern.Wang CY, Ng CC, Tzeng WS, Shyu YTInt J Syst Evol Microbiol10.1099/ijs.0.008896-02009Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/*microbiology, Marinobacter/classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/*metabolism, TaiwanMetabolism
Phylogeny31778353Marinobacter fonticola sp. nov., isolated from deep sea cold seep sediment.Sun QL, Sun YL, Sun YY, Luan ZD, Lian CInt J Syst Evol Microbiol10.1099/ijsem.0.0038952020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Glycolipids/chemistry, Marinobacter/*classification/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29224Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172564528776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/