Strain identifier

BacDive ID: 133495

Type strain: Yes

Species: Winogradskyella rapida

Strain Designation: SCB36

Culture col. no.: CECT 7392, CCUG 56098

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 29196

BacDive-ID: 133495

keywords: gram-negative, aerobe, Bacteria, 16S sequence, motile, rod-shaped

description: Winogradskyella rapida SCB36 is an aerobe, gram-negative, motile bacterium that was isolated from seawater.

doi: 10.13145/bacdive133495.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidetes
  • domain: Bacteria
  • phylum: Bacteroidetes
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Winogradskyella
  • species: Winogradskyella rapida
  • full scientific name: Winogradskyella rapida Pinhassi et al. 2009

@ref: 29196

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Winogradskyella

species: Winogradskyella rapida

strain designation: SCB36

type strain: yes

Morphology

cell morphology

  • @ref: 29196
  • gram stain: negative
  • cell length: 0.8-1.8 µm
  • cell width: 0.3-0.4 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: gliding

colony morphology

  • @ref: 60858
  • incubation period: 1 day

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
29196positivegrowth4-36
29196positiveoptimum24psychrophilic
60858positivegrowth20-30

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29196aerobe
60858aerobe

halophily

@refsaltgrowthtested relationconcentration
29196NaClpositivegrowth1-8 %
29196NaClpositiveoptimum2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2919628757fructose+carbon source
2919617234glucose+carbon source
2919617754glycerol+carbon source
2919617306maltose+carbon source
2919629864mannitol+carbon source
2919637684mannose+carbon source

metabolite production

  • @ref: 29196
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
29196acid phosphatase+3.1.3.2
29196alkaline phosphatase+3.1.3.1
29196catalase+1.11.1.6
29196gelatinase+
29196cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
29196seawater
60858Seawater surface,enrichment with protein1995CA,Southern California BightUSAUSANorth America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Sequence information

16S sequences

  • @ref: 29196
  • description: Winogradskyella rapida strain SCB36 16S ribosomal RNA gene, partial sequence
  • accession: U64013
  • length: 1478
  • database: nuccore
  • NCBI tax ID: 549701

GC content

  • @ref: 29196
  • GC-content: 36.3

External links

@ref: 29196

culture collection no.: CECT 7392, CCUG 56098

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/844811

Reference

@idauthorstitledoi/urljournalpubmedID_cross_referencecatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2561910.1099/ijs.0.008334-0
29196Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-1725619
60858Curators of the CCUGhttps://www.ccug.se/strain?id=56098Culture Collection University of Gothenburg (CCUG) (CCUG 56098)