Strain identifier

BacDive ID: 133495

Type strain: Yes

Species: Winogradskyella rapida

Strain Designation: SCB36

NCBI tax ID(s): 549701 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 29196

BacDive-ID: 133495

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Winogradskyella rapida SCB36 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 549701
  • Matching level: species

doi: 10.13145/bacdive133495.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Winogradskyella
  • species: Winogradskyella rapida
  • full scientific name: Winogradskyella rapida Pinhassi et al. 2009

@ref: 29196

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Winogradskyella

species: Winogradskyella rapida

strain designation: SCB36

type strain: yes

Morphology

cell morphology

  • @ref: 29196
  • gram stain: negative
  • cell length: 0.8-1.8 µm
  • cell width: 0.3-0.4 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: gliding

colony morphology

  • @ref: 60858
  • incubation period: 1 day

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
29196positivegrowth4-36
29196positiveoptimum24psychrophilic
60858positivegrowth20-30

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29196aerobe
60858aerobe

halophily

@refsaltgrowthtested relationconcentration
29196NaClpositivegrowth1-8 %
29196NaClpositiveoptimum2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2919628757fructose+carbon source
2919617234glucose+carbon source
2919617754glycerol+carbon source
2919617306maltose+carbon source
2919629864mannitol+carbon source
2919637684mannose+carbon source

metabolite production

  • @ref: 29196
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
29196acid phosphatase+3.1.3.2
29196alkaline phosphatase+3.1.3.1
29196catalase+1.11.1.6
29196gelatinase+
29196cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
29196seawater
60858Seawater surface,enrichment with protein1995CA,Southern California BightUSAUSANorth America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_72232.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_1844;97_2608;98_27830;99_72232&stattab=map
  • Last taxonomy: Winogradskyella
  • 16S sequence: U64013
  • Sequence Identity:
  • Total samples: 64
  • soil counts: 33
  • aquatic counts: 23
  • animal counts: 8

Sequence information

16S sequences

  • @ref: 29196
  • description: Winogradskyella rapida strain SCB36 16S ribosomal RNA gene, partial sequence
  • accession: U64013
  • length: 1478
  • database: nuccore
  • NCBI tax ID: 549701

GC content

  • @ref: 29196
  • GC-content: 36.3

External links

@ref: 29196

culture collection no.: CECT 7392, CCUG 56098

straininfo link

  • @ref: 91469
  • straininfo: 364205

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19605730Winogradskyella rapida sp. nov., isolated from protein-enriched seawater.Pinhassi J, Nedashkovskaya OI, Hagstrom A, Vancanneyt MInt J Syst Evol Microbiol10.1099/ijs.0.008334-02009Aerobiosis, Bacterial Typing Techniques, California, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Phylogeny, Pigments, Biological/biosynthesis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNAGenetics
Phylogeny22427445Winogradskyella damuponensis sp. nov., isolated from seawater.Lee DH, Cho SJ, Kim SM, Lee SBInt J Syst Evol Microbiol10.1099/ijs.0.041384-02012Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny27189204Winogradskyella sediminis sp. nov., isolated from marine sediment.Zhang DC, Liu YX, Huang HJ, Weber K, Margesin RInt J Syst Evol Microbiol10.1099/ijsem.0.0011572016Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29196Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172561928776041
60858Curators of the CCUGhttps://www.ccug.se/strain?id=56098Culture Collection University of Gothenburg (CCUG) (CCUG 56098)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91469Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID364205.1