Strain identifier
BacDive ID: 133495
Type strain: 
Species: Winogradskyella rapida
Strain Designation: SCB36
Culture col. no.: CECT 7392, CCUG 56098
version 5.0 (current version)
General
@ref: 29196
BacDive-ID: 133495
keywords: gram-negative, aerobe, Bacteria, 16S sequence, motile, rod-shaped
description: Winogradskyella rapida SCB36 is an aerobe, gram-negative, motile bacterium that was isolated from seawater.
doi: 10.13145/bacdive133495.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidetes
- domain: Bacteria
- phylum: Bacteroidetes
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Winogradskyella
- species: Winogradskyella rapida
- full scientific name: Winogradskyella rapida Pinhassi et al. 2009
@ref: 29196
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Winogradskyella
species: Winogradskyella rapida
strain designation: SCB36
type strain: yes
Morphology
cell morphology
- @ref: 29196
- gram stain: negative
- cell length: 0.8-1.8 µm
- cell width: 0.3-0.4 µm
- cell shape: rod-shaped
- motility: yes
- flagellum arrangement: gliding
colony morphology
- @ref: 60858
- incubation period: 1 day
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29196 | positive | growth | 4-36 | |
| 29196 | positive | optimum | 24 | psychrophilic |
| 60858 | positive | growth | 20-30 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 29196 | aerobe |
| 60858 | aerobe |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29196 | NaCl | positive | growth | 1-8 % |
| 29196 | NaCl | positive | optimum | 2.5 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29196 | 28757 | fructose | + | carbon source |
| 29196 | 17234 | glucose | + | carbon source |
| 29196 | 17754 | glycerol | + | carbon source |
| 29196 | 17306 | maltose | + | carbon source |
| 29196 | 29864 | mannitol | + | carbon source |
| 29196 | 37684 | mannose | + | carbon source |
metabolite production
- @ref: 29196
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: yes
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29196 | acid phosphatase | + | 3.1.3.2 |
| 29196 | alkaline phosphatase | + | 3.1.3.1 |
| 29196 | catalase | + | 1.11.1.6 |
| 29196 | gelatinase | + | |
| 29196 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | sampling date | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 29196 | seawater | |||||
| 60858 | Seawater surface,enrichment with protein | 1995 | CA,Southern California Bight | USA | USA | North America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
Sequence information
16S sequences
- @ref: 29196
- description: Winogradskyella rapida strain SCB36 16S ribosomal RNA gene, partial sequence
- accession: U64013
- length: 1478
- database: nuccore
- NCBI tax ID: 549701
GC content
- @ref: 29196
- GC-content: 36.3
External links
@ref: 29196
culture collection no.: CECT 7392, CCUG 56098
straininfo link
- @ref: 20218
- passport: http://www.straininfo.net/strains/844811
Reference
| @id | authors | title | doi/url | journal | pubmed | ID_cross_reference | catalogue |
|---|---|---|---|---|---|---|---|
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | ||||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
| 25619 | 10.1099/ijs.0.008334-0 | ||||||
| 29196 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25619 | |||
| 60858 | Curators of the CCUG | https://www.ccug.se/strain?id=56098 | Culture Collection University of Gothenburg (CCUG) (CCUG 56098) |