Strain identifier
BacDive ID: 133488
Type strain:
Species: Muricauda lutaonensis
Strain Designation: CC-HSB-11
NCBI tax ID(s): 516051 (species)
version 8.1 (current version)
General
@ref: 29174
BacDive-ID: 133488
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Muricauda lutaonensis CC-HSB-11 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from hot spring.
NCBI tax id
- NCBI tax id: 516051
- Matching level: species
doi: 10.13145/bacdive133488.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Muricauda
- species: Muricauda lutaonensis
- full scientific name: Muricauda lutaonensis Arun et al. 2009
synonyms
- @ref: 20215
- synonym: Allomuricauda lutaonensis
@ref: 29174
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Muricauda
species: Muricauda lutaonensis
strain designation: CC-HSB-11
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
29174 | negative | 11.5 µm | 0.4 µm | rod-shaped | no | |
69480 | no | 94.442 | ||||
69480 | negative | 99.887 |
pigmentation
- @ref: 29174
- production: yes
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
29174 | positive | growth | 25-55 | |
29174 | positive | optimum | 41 | thermophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
29174 | positive | growth | 06-09 | alkaliphile |
29174 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
- @ref: 29174
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
29174 | no | |
69481 | no | 100 |
69480 | no | 99.999 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
29174 | NaCl | positive | growth | 02-06 % |
29174 | NaCl | positive | optimum | 4 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29174 | 30089 | acetate | + | carbon source |
29174 | 17057 | cellobiose | + | carbon source |
29174 | 23652 | dextrin | + | carbon source |
29174 | 28757 | fructose | + | carbon source |
29174 | 17234 | glucose | + | carbon source |
29174 | 29987 | glutamate | + | carbon source |
29174 | 17596 | inosine | + | carbon source |
29174 | 17716 | lactose | + | carbon source |
29174 | 17306 | maltose | + | carbon source |
29174 | 37684 | mannose | + | carbon source |
29174 | 28053 | melibiose | + | carbon source |
29174 | 26271 | proline | + | carbon source |
29174 | 51850 | methyl pyruvate | + | carbon source |
29174 | 16634 | raffinose | + | carbon source |
29174 | 30031 | succinate | + | carbon source |
29174 | 17992 | sucrose | + | carbon source |
29174 | 26986 | threonine | + | carbon source |
29174 | 27082 | trehalose | + | carbon source |
29174 | 4853 | esculin | + | hydrolysis |
enzymes
@ref | value | activity | ec |
---|---|---|---|
29174 | acid phosphatase | + | 3.1.3.2 |
29174 | alpha-galactosidase | + | 3.2.1.22 |
29174 | catalase | + | 1.11.1.6 |
29174 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 29174
- sample type: hot spring
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Thermal spring |
#Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_3558.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15779;96_1852;97_2222;98_2728;99_3558&stattab=map
- Last taxonomy: Muricauda lutaonensis subclade
- 16S sequence: EU564844
- Sequence Identity:
- Total samples: 1769
- soil counts: 81
- aquatic counts: 1441
- animal counts: 243
- plant counts: 4
Sequence information
16S sequences
- @ref: 29174
- description: Muricauda lutaonensis strain CC-HSB-11 16S ribosomal RNA gene, partial sequence
- accession: EU564844
- length: 1438
- database: nuccore
- NCBI tax ID: 516051
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Allomuricauda lutaonensis CC-HSB-11 | GCA_000963865 | complete | ncbi | 516051 |
66792 | Muricauda lutaonensis strain CC-HSB-11 | 516051.11 | complete | patric | 516051 |
66792 | Muricauda lutaonensis CC-HSB-11 | 2630968620 | complete | img | 516051 |
GC content
- @ref: 29174
- GC-content: 46.4
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 92.417 | no |
flagellated | no | 96.779 | yes |
gram-positive | no | 97.306 | yes |
anaerobic | no | 98.921 | yes |
aerobic | yes | 83.06 | no |
halophile | no | 78.586 | no |
spore-forming | no | 96.49 | no |
thermophile | no | 87.982 | yes |
glucose-util | yes | 86.582 | yes |
glucose-ferment | no | 90.332 | no |
External links
@ref: 29174
culture collection no.: BCRC 17850, KCTC 22339
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19625419 | Muricauda lutaonensis sp. nov., a moderate thermophile isolated from a coastal hot spring. | Arun AB, Chen WM, Lai WA, Chao JH, Rekha PD, Shen FT, Singh S, Young CC | Int J Syst Evol Microbiol | 10.1099/ijs.0.007930-0 | 2009 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Flavobacteriaceae/classification/genetics/*isolation & purification/metabolism, Hot Springs/*microbiology, Hot Temperature, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Taiwan | Metabolism |
21384920 | Supercritical carbon dioxide micronization of zeaxanthin from moderately thermophilic bacteria Muricauda lutaonensis CC-HSB-11T. | Hameed A, Arun AB, Ho HP, Chang CM, Rekha PD, Lee MR, Singh S, Young CC | J Agric Food Chem | 10.1021/jf200444q | 2011 | Carbon Dioxide/*chemistry, Chromatography, High Pressure Liquid, Fermentation, Flavobacteriaceae/*chemistry, Mass Spectrometry, Microscopy, Electron, Scanning, Spectrophotometry, Ultraviolet, Xanthophylls/*chemistry, Zeaxanthins | ||
Genetics | 25986927 | Complete genome of a coastal marine bacterium Muricauda lutaonensis KCTC 22339(T). | Oh J, Choe H, Kim BK, Kim KM | Mar Genomics | 10.1016/j.margen.2015.05.002 | 2015 | DNA, Bacterial/genetics, Flavobacteriaceae/*genetics, Gene Expression Regulation, Bacterial, *Genome, Bacterial | |
Phylogeny | 32721276 | Muricauda ochracea sp. nov., isolated from a tidal flat in the Republic of Korea. | Kim D, Yoo Y, Khim JS, Yang D, Pathiraja D, Choi IG, Kim JJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004312 | 2020 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
29174 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25598 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |