Strain identifier

BacDive ID: 133488

Type strain: Yes

Species: Muricauda lutaonensis

Strain Designation: CC-HSB-11

NCBI tax ID(s): 516051 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 29174

BacDive-ID: 133488

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Muricauda lutaonensis CC-HSB-11 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from hot spring.

NCBI tax id

  • NCBI tax id: 516051
  • Matching level: species

doi: 10.13145/bacdive133488.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Muricauda
  • species: Muricauda lutaonensis
  • full scientific name: Muricauda lutaonensis Arun et al. 2009
  • synonyms

    • @ref: 20215
    • synonym: Allomuricauda lutaonensis

@ref: 29174

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Muricauda

species: Muricauda lutaonensis

strain designation: CC-HSB-11

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29174negative11.5 µm0.4 µmrod-shapedno
69480no94.442
69480negative99.887

pigmentation

  • @ref: 29174
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
29174positivegrowth25-55
29174positiveoptimum41thermophilic

culture pH

@refabilitytypepHPH range
29174positivegrowth06-09alkaliphile
29174positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 29174
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
29174no
69481no100
69480no99.999

halophily

@refsaltgrowthtested relationconcentration
29174NaClpositivegrowth02-06 %
29174NaClpositiveoptimum4 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2917430089acetate+carbon source
2917417057cellobiose+carbon source
2917423652dextrin+carbon source
2917428757fructose+carbon source
2917417234glucose+carbon source
2917429987glutamate+carbon source
2917417596inosine+carbon source
2917417716lactose+carbon source
2917417306maltose+carbon source
2917437684mannose+carbon source
2917428053melibiose+carbon source
2917426271proline+carbon source
2917451850methyl pyruvate+carbon source
2917416634raffinose+carbon source
2917430031succinate+carbon source
2917417992sucrose+carbon source
2917426986threonine+carbon source
2917427082trehalose+carbon source
291744853esculin+hydrolysis

enzymes

@refvalueactivityec
29174acid phosphatase+3.1.3.2
29174alpha-galactosidase+3.2.1.22
29174catalase+1.11.1.6
29174cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 29174
  • sample type: hot spring

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3558.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15779;96_1852;97_2222;98_2728;99_3558&stattab=map
  • Last taxonomy: Muricauda lutaonensis subclade
  • 16S sequence: EU564844
  • Sequence Identity:
  • Total samples: 1769
  • soil counts: 81
  • aquatic counts: 1441
  • animal counts: 243
  • plant counts: 4

Sequence information

16S sequences

  • @ref: 29174
  • description: Muricauda lutaonensis strain CC-HSB-11 16S ribosomal RNA gene, partial sequence
  • accession: EU564844
  • length: 1438
  • database: nuccore
  • NCBI tax ID: 516051

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Allomuricauda lutaonensis CC-HSB-11GCA_000963865completencbi516051
66792Muricauda lutaonensis strain CC-HSB-11516051.11completepatric516051
66792Muricauda lutaonensis CC-HSB-112630968620completeimg516051

GC content

  • @ref: 29174
  • GC-content: 46.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno92.417no
flagellatedno96.779yes
gram-positiveno97.306yes
anaerobicno98.921yes
aerobicyes83.06no
halophileno78.586no
spore-formingno96.49no
thermophileno87.982yes
glucose-utilyes86.582yes
glucose-fermentno90.332no

External links

@ref: 29174

culture collection no.: BCRC 17850, KCTC 22339

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19625419Muricauda lutaonensis sp. nov., a moderate thermophile isolated from a coastal hot spring.Arun AB, Chen WM, Lai WA, Chao JH, Rekha PD, Shen FT, Singh S, Young CCInt J Syst Evol Microbiol10.1099/ijs.0.007930-02009DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Flavobacteriaceae/classification/genetics/*isolation & purification/metabolism, Hot Springs/*microbiology, Hot Temperature, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, TaiwanMetabolism
21384920Supercritical carbon dioxide micronization of zeaxanthin from moderately thermophilic bacteria Muricauda lutaonensis CC-HSB-11T.Hameed A, Arun AB, Ho HP, Chang CM, Rekha PD, Lee MR, Singh S, Young CCJ Agric Food Chem10.1021/jf200444q2011Carbon Dioxide/*chemistry, Chromatography, High Pressure Liquid, Fermentation, Flavobacteriaceae/*chemistry, Mass Spectrometry, Microscopy, Electron, Scanning, Spectrophotometry, Ultraviolet, Xanthophylls/*chemistry, Zeaxanthins
Genetics25986927Complete genome of a coastal marine bacterium Muricauda lutaonensis KCTC 22339(T).Oh J, Choe H, Kim BK, Kim KMMar Genomics10.1016/j.margen.2015.05.0022015DNA, Bacterial/genetics, Flavobacteriaceae/*genetics, Gene Expression Regulation, Bacterial, *Genome, Bacterial
Phylogeny32721276Muricauda ochracea sp. nov., isolated from a tidal flat in the Republic of Korea.Kim D, Yoo Y, Khim JS, Yang D, Pathiraja D, Choi IG, Kim JJInt J Syst Evol Microbiol10.1099/ijsem.0.0043122020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmedjournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29174Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172559828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa102533211880Nucleic Acids Res. 49: D498-D508 2020
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1