Strain identifier
BacDive ID: 133483
Type strain: 
Species: Rhodovulum lacipunicei
Strain Designation: JA322
Strain history: <- Ch Sasikala, Institute of Science and Technology, Univ. Hyderabad, India
NCBI tax ID(s): 487515 (species)
version 8.1 (current version)
General
@ref: 29158
BacDive-ID: 133483
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, rod-shaped
description: Rhodovulum lacipunicei JA322 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from freshwater .
NCBI tax id
- NCBI tax id: 487515
- Matching level: species
strain history
- @ref: 67771
- history: <- Ch Sasikala, Institute of Science and Technology, Univ. Hyderabad, India
doi: 10.13145/bacdive133483.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Rhodovulum
- species: Rhodovulum lacipunicei
- full scientific name: Rhodovulum lacipunicei Chakravarthy et al. 2009
@ref: 29158
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Rhodovulum
species: Rhodovulum lacipunicei
strain designation: JA322
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility |
|---|---|---|---|---|---|
| 29158 | negative | 2 µm | 0.85 µm | rod-shaped | no |
| 67771 | rod-shaped | no | |||
| 67771 | ovoid-shaped | ||||
| 67771 | negative |
pigmentation
- @ref: 29158
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29158 | positive | growth | 25-35 | mesophilic |
| 29158 | positive | optimum | 30 | mesophilic |
| 67771 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29158 | positive | growth | 6.5-9.0 | alkaliphile |
| 29158 | positive | optimum | 7.75 |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: anaerobe
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29158 | NaCl | positive | growth | 0-5 % |
| 29158 | NaCl | positive | optimum | 2.5 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29158 | 30089 | acetate | + | carbon source |
| 29158 | 35391 | aspartate | + | carbon source |
| 29158 | 28757 | fructose | + | carbon source |
| 29158 | 17234 | glucose | + | carbon source |
| 29158 | 24996 | lactate | + | carbon source |
| 29158 | 25115 | malate | + | carbon source |
| 29158 | 15361 | pyruvate | + | carbon source |
| 29158 | 30031 | succinate | + | carbon source |
| 29158 | 31011 | valerate | + | carbon source |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 29158 | freshwater (river, lake, pond) | ||||
| 67771 | From water from a saline pond with purple-coloured waters | Satpada in Orissa | India | IND | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Aquatic | #Pond (small) |
| #Environmental | #Aquatic | #River (Creek) |
Sequence information
16S sequences
- @ref: 29158
- description: Rhodovulum lacipunicei partial 16S rRNA gene, type strain JA322T
- accession: AM921780
- length: 1356
- database: nuccore
- NCBI tax ID: 487515
GC content
| @ref | GC-content | method |
|---|---|---|
| 29158 | 68.6 | |
| 67771 | 68.6 | high performance liquid chromatography (HPLC) |
External links
@ref: 29158
culture collection no.: NBRC 104147, KCTC 5700
literature
- topic: Phylogeny
- Pubmed-ID: 19542142
- title: Rhodovulum lacipunicei sp. nov., an obligate sulfide-demanding phototrophic alphaproteobacterium isolated from a purple pond in India.
- authors: Chakravarthy SK, Sucharitha K, Sasikala Ch, Ramana ChV
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.007617-0
- year: 2009
- mesh: Bacterial Typing Techniques, DNA, Bacterial/analysis, Fresh Water/chemistry/*microbiology, Genes, rRNA, India, Molecular Sequence Data, Phenotype, *Phototrophic Processes, Phylogeny, Proteobacteria/*classification/genetics/isolation & purification/physiology, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification/physiology, Sequence Analysis, DNA, *Sodium Chloride, Species Specificity, Sulfides/*metabolism
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29158 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25582 | 28776041 |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc |