Strain identifier
BacDive ID: 133473
Type strain: 
Species: Rhizobium mesosinicum
Strain Designation: 5LMG24135
Strain history: CCBAU 25010.
NCBI tax ID(s): 335017 (species)
version 8.1 (current version)
General
@ref: 29107
BacDive-ID: 133473
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Rhizobium mesosinicum 5LMG24135 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from plant endophyte.
NCBI tax id
- NCBI tax id: 335017
- Matching level: species
strain history
- @ref: 67770
- history: CCBAU 25010.
doi: 10.13145/bacdive133473.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Rhizobium
- species: Rhizobium mesosinicum
- full scientific name: Rhizobium mesosinicum Lin et al. 2009
@ref: 29107
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium mesosinicum
strain designation: 5LMG24135
type strain: yes
Morphology
cell morphology
- @ref: 29107
- gram stain: negative
- cell length: 1.8 µm
- cell width: 0.6 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29107 | positive | growth | 25-30 | mesophilic |
| 29107 | positive | optimum | 37 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29107 | positive | growth | 4.0-10 | alkaliphile |
| 29107 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 29107
- oxygen tolerance: aerobe
spore formation
- @ref: 29107
- spore formation: no
halophily
- @ref: 29107
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 2 %
observation
- @ref: 29107
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29107 | 33942 | ribose | + | carbon source |
| 29107 | 18222 | xylose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29107 | catalase | + | 1.11.1.6 |
| 29107 | cytochrome oxidase | + | 1.9.3.1 |
| 29107 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 29107 | plant endophyte | |||||
| 67770 | Root nodules of Albizia julibrissin | Albizia julibrissin | Shandong Province | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Host | #Other |
| #Host | #Plants |
taxonmaps
- @ref: 69479
- File name: preview.99_3787.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_62;97_2170;98_2887;99_3787&stattab=map
- Last taxonomy: Rhizobium
- 16S sequence: DQ100063
- Sequence Identity:
- Total samples: 1890
- soil counts: 1145
- aquatic counts: 181
- animal counts: 198
- plant counts: 366
Sequence information
16S sequences
- @ref: 29107
- description: Rhizobium mesosinicum strain CCBAU 25010 16S ribosomal RNA gene, partial sequence
- accession: DQ100063
- length: 1356
- database: nuccore
- NCBI tax ID: 335017
Genome sequences
- @ref: 66792
- description: Rhizobium mesosinicum LMG 24135
- accession: 2739367594
- assembly level: draft
- database: img
- NCBI tax ID: 335017
GC content
| @ref | GC-content | method |
|---|---|---|
| 29107 | 61.8 | |
| 67770 | 61.8 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 29107
culture collection no.: JCM 14777, CCBAU 25010, LMG 24135
straininfo link
- @ref: 91456
- straininfo: 293782
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19567587 | Rhizobium mesosinicum sp. nov., isolated from root nodules of three different legumes. | Lin DX, Chen WF, Wang FQ, Hu D, Wang ET, Sui XH, Chen WX | Int J Syst Evol Microbiol | 10.1099/ijs.0.006387-0 | 2009 | Aerobiosis, Bacterial Proteins/genetics, Bacterial Typing Techniques, China, Cluster Analysis, DNA Fingerprinting/methods, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA, Ribosomal Spacer/chemistry/genetics, Fabaceae/*microbiology, Locomotion, Molecular Sequence Data, N-Acetylglucosaminyltransferases/genetics, Nucleic Acid Hybridization, Phylogeny, Plant Roots/*microbiology, Proteome/analysis, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Rhizobium/*classification/genetics/*isolation & purification/physiology, Sequence Analysis, DNA, Transcription Factors/genetics | Genetics |
| Phylogeny | 21984664 | Rhizobium petrolearium sp. nov., isolated from oil-contaminated soil. | Zhang X, Li B, Wang H, Sui X, Ma X, Hong Q, Jiang R | Int J Syst Evol Microbiol | 10.1099/ijs.0.026880-0 | 2011 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, *Petroleum Pollution, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics/physiology, Sequence Analysis, DNA, Sewage/*microbiology, Soil/analysis | Genetics |
| Phylogeny | 28598309 | Reclassification of Arthrobacter viscosus as Rhizobium viscosum comb. nov. | Flores-Felix JD, Ramirez-Bahena MH, Salazar S, Peix A, Velazquez E | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001864 | 2017 | Arthrobacter/*classification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Genes, Bacterial, Guatemala, Nucleic Acid Hybridization, *Phylogeny, Rhizobium/*classification, Sequence Analysis, DNA, *Soil Microbiology | Transcriptome |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29107 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25535 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 91456 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID293782.1 |