Strain identifier

BacDive ID: 133468

Type strain: Yes

Species: Mesorhizobium opportunistum

NCBI tax ID(s): 593909 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 29081

BacDive-ID: 133468

keywords: 16S sequence, Bacteria, Gram-negative, rod-shaped

description: Mesorhizobium opportunistum LMG 24607 is a Gram-negative, rod-shaped bacterium that was isolated from plant associated.

NCBI tax id

  • NCBI tax id: 593909
  • Matching level: species

doi: 10.13145/bacdive133468.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Mesorhizobium
  • species: Mesorhizobium opportunistum
  • full scientific name: Mesorhizobium opportunistum Nandasena et al. 2009

@ref: 29081

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Phyllobacteriaceae

genus: Mesorhizobium

species: Mesorhizobium opportunistum

type strain: yes

Morphology

cell morphology

  • @ref: 29081
  • gram stain: negative
  • cell shape: rod-shaped

Culture and growth conditions

culture pH

@refabilitytypepHPH range
29081positivegrowth5.5-9.0alkaliphile
29081positiveoptimum7.25

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2908122599arabinose+carbon source
2908117716lactose+carbon source
2908117306maltose+carbon source
2908128053melibiose+carbon source
29081506227N-acetylglucosamine+carbon source
2908117992sucrose+carbon source
2908127082trehalose+carbon source

Isolation, sampling and environmental information

isolation

  • @ref: 29081
  • sample type: plant associated

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants

taxonmaps

  • @ref: 69479
  • File name: preview.99_315.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_239;98_268;99_315&stattab=map
  • Last taxonomy: Mesorhizobium
  • 16S sequence: AY601515
  • Sequence Identity:
  • Total samples: 49047
  • soil counts: 28701
  • aquatic counts: 8865
  • animal counts: 7451
  • plant counts: 4030

Sequence information

16S sequences

  • @ref: 29081
  • description: Mesorhizobium sp. WSM2075 16S ribosomal RNA gene, partial sequence
  • accession: AY601515
  • length: 1441
  • database: nuccore
  • NCBI tax ID: 536019

GC content

  • @ref: 29081
  • GC-content: 63.22

External links

@ref: 29081

culture collection no.: LMG 24607, HAMBI 3007, WSM 2075

straininfo link

  • @ref: 91451
  • straininfo: 364156

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19605705Mesorhizobium australicum sp. nov. and Mesorhizobium opportunistum sp. nov., isolated from Biserrula pelecinus L. in Australia.Nandasena KG, O'Hara GW, Tiwari RP, Willems A, Howieson JGInt J Syst Evol Microbiol10.1099/ijs.0.005728-02009Alphaproteobacteria/*classification/genetics/*isolation & purification, Australia, Bacterial Proteins/genetics, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fabaceae/*microbiology, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Genetics24976886Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075(T.).Reeve W, Nandasena K, Yates R, Tiwari R, O'Hara G, Ninawi M, Chertkov O, Goodwin L, Bruce D, Detter C, Tapia R, Han S, Woyke T, Pitluck S, Nolan M, Land M, Copeland A, Liolios K, Pati A, Mavromatis K, Markowitz V, Kyrpides N, Ivanova N, Goodwin L, Meenakshi U, Howieson JStand Genomic Sci10.4056/sigs.45382642013
Phylogeny25736411Revision of the taxonomic status of type strains of Mesorhizobium loti and reclassification of strain USDA 3471T as the type strain of Mesorhizobiumerdmanii sp. nov. and ATCC 33669T as the type strain of Mesorhizobiumjarvisii sp. nov.Martinez-Hidalgo P, Ramirez-Bahena MH, Flores-Felix JD, Rivas R, Igual JM, Mateos PF, Martinez-Molina E, Leon-Barrios M, Peix A, Velazquez EInt J Syst Evol Microbiol10.1099/ijs.0.0001642015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Genes, Bacterial, Lotus/*microbiology, Mesorhizobium/*classification/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/microbiology, Sequence Analysis, DNA, United States, United States Department of AgricultureGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29081Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172551128776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91451Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID364156.1