Strain identifier
BacDive ID: 133468
Type strain:
Species: Mesorhizobium opportunistum
NCBI tax ID(s): 593909 (species)
version 8.1 (current version)
General
@ref: 29081
BacDive-ID: 133468
keywords: 16S sequence, Bacteria, Gram-negative, rod-shaped
description: Mesorhizobium opportunistum LMG 24607 is a Gram-negative, rod-shaped bacterium that was isolated from plant associated.
NCBI tax id
- NCBI tax id: 593909
- Matching level: species
doi: 10.13145/bacdive133468.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Phyllobacteriaceae
- genus: Mesorhizobium
- species: Mesorhizobium opportunistum
- full scientific name: Mesorhizobium opportunistum Nandasena et al. 2009
@ref: 29081
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Phyllobacteriaceae
genus: Mesorhizobium
species: Mesorhizobium opportunistum
type strain: yes
Morphology
cell morphology
- @ref: 29081
- gram stain: negative
- cell shape: rod-shaped
Culture and growth conditions
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
29081 | positive | growth | 5.5-9.0 | alkaliphile |
29081 | positive | optimum | 7.25 |
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29081 | 22599 | arabinose | + | carbon source |
29081 | 17716 | lactose | + | carbon source |
29081 | 17306 | maltose | + | carbon source |
29081 | 28053 | melibiose | + | carbon source |
29081 | 506227 | N-acetylglucosamine | + | carbon source |
29081 | 17992 | sucrose | + | carbon source |
29081 | 27082 | trehalose | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 29081
- sample type: plant associated
isolation source categories
- Cat1: #Host
- Cat2: #Plants
taxonmaps
- @ref: 69479
- File name: preview.99_315.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_239;98_268;99_315&stattab=map
- Last taxonomy: Mesorhizobium
- 16S sequence: AY601515
- Sequence Identity:
- Total samples: 49047
- soil counts: 28701
- aquatic counts: 8865
- animal counts: 7451
- plant counts: 4030
Sequence information
16S sequences
- @ref: 29081
- description: Mesorhizobium sp. WSM2075 16S ribosomal RNA gene, partial sequence
- accession: AY601515
- length: 1441
- database: nuccore
- NCBI tax ID: 536019
GC content
- @ref: 29081
- GC-content: 63.22
External links
@ref: 29081
culture collection no.: LMG 24607, HAMBI 3007, WSM 2075
straininfo link
- @ref: 91451
- straininfo: 364156
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19605705 | Mesorhizobium australicum sp. nov. and Mesorhizobium opportunistum sp. nov., isolated from Biserrula pelecinus L. in Australia. | Nandasena KG, O'Hara GW, Tiwari RP, Willems A, Howieson JG | Int J Syst Evol Microbiol | 10.1099/ijs.0.005728-0 | 2009 | Alphaproteobacteria/*classification/genetics/*isolation & purification, Australia, Bacterial Proteins/genetics, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fabaceae/*microbiology, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
Genetics | 24976886 | Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075(T.). | Reeve W, Nandasena K, Yates R, Tiwari R, O'Hara G, Ninawi M, Chertkov O, Goodwin L, Bruce D, Detter C, Tapia R, Han S, Woyke T, Pitluck S, Nolan M, Land M, Copeland A, Liolios K, Pati A, Mavromatis K, Markowitz V, Kyrpides N, Ivanova N, Goodwin L, Meenakshi U, Howieson J | Stand Genomic Sci | 10.4056/sigs.4538264 | 2013 | ||
Phylogeny | 25736411 | Revision of the taxonomic status of type strains of Mesorhizobium loti and reclassification of strain USDA 3471T as the type strain of Mesorhizobiumerdmanii sp. nov. and ATCC 33669T as the type strain of Mesorhizobiumjarvisii sp. nov. | Martinez-Hidalgo P, Ramirez-Bahena MH, Flores-Felix JD, Rivas R, Igual JM, Mateos PF, Martinez-Molina E, Leon-Barrios M, Peix A, Velazquez E | Int J Syst Evol Microbiol | 10.1099/ijs.0.000164 | 2015 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Genes, Bacterial, Lotus/*microbiology, Mesorhizobium/*classification/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/microbiology, Sequence Analysis, DNA, United States, United States Department of Agriculture | Genetics |
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
29081 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25511 | 28776041 |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
91451 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID364156.1 |