Strain identifier

BacDive ID: 133419

Type strain: Yes

Species: Aliiglaciecola lipolytica

Strain Designation: E3

Strain history: Z.-P. Liu E3.

NCBI tax ID(s): 477689 (species)

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General

@ref: 28884

BacDive-ID: 133419

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Aliiglaciecola lipolytica E3 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 477689
  • Matching level: species

strain history

  • @ref: 67770
  • history: Z.-P. Liu E3.

doi: 10.13145/bacdive133419.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Aliiglaciecola
  • species: Aliiglaciecola lipolytica
  • full scientific name: Aliiglaciecola lipolytica (Chen et al. 2009) Jean et al. 2013

  • synonyms

    • @ref: 20215
    • synonym: Glaciecola lipolytica

@ref: 28884

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Aliiglaciecola

species: Aliiglaciecola lipolytica

strain designation: E3

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell shapemotilityconfidence
28884negative1.0-2.5 µmrod-shapedyes
125439negative97.2

pigmentation

  • @ref: 28884
  • production: no

Culture and growth conditions

culture temp

@refgrowthtypetemperature
28884positivegrowth04-36
28884positiveoptimum30
67770positivegrowth30

culture pH

@refabilitytypepHPH range
28884positivegrowth07-09alkaliphile
28884positiveoptimum7.6

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
28884aerobe
125439obligate aerobe99.3

spore formation

@refspore formationconfidence
28884no
125439no96.7

halophily

@refsaltgrowthtested relationconcentration
30838NaClpositivegrowth0-1 %
28884NaClpositiveoptimum2 %

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
28884168082-dehydro-D-gluconate+carbon source
2888417057cellobiose+carbon source
2888433984fucose+carbon source
2888428260galactose+carbon source
288845291gelatin+carbon source
2888417234glucose+carbon source
2888417716lactose+carbon source
2888425017leucine+carbon source
2888417306maltose+carbon source
2888429864mannitol+carbon source
2888428053melibiose+carbon source
28884506227N-acetylglucosamine+carbon source
2888416634raffinose+carbon source
2888417814salicin+carbon source
2888417992sucrose+carbon source
2888427082trehalose+carbon source
2888453258sodium citrate+carbon source
2888453424tween 20+carbon source
2888453423tween 40+carbon source
2888453425tween 60+carbon source
2888453426tween 80+carbon source
2888416199urea+carbon source
2888418222xylose+carbon source
288844853esculin+hydrolysis
2888417632nitrate+reduction

metabolite production

  • @ref: 28884
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
28884acid phosphatase+3.1.3.2
28884alkaline phosphatase+3.1.3.1
28884alpha-galactosidase+3.2.1.22
28884catalase+1.11.1.6
28884gelatinase+
28884cytochrome oxidase+1.9.3.1
28884urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
28884seawater
67770Coastal surface seawater near Tianjin CityChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_6772.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_3197;97_3923;98_4995;99_6772&stattab=map
  • Last taxonomy: Aliiglaciecola lipolytica
  • 16S sequence: EU183316
  • Sequence Identity:
  • Total samples: 348
  • soil counts: 1
  • aquatic counts: 216
  • animal counts: 130
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 28884
  • description: Glaciecola lipolytica strain E3 16S ribosomal RNA gene, partial sequence
  • accession: EU183316
  • length: 1425
  • database: nuccore
  • NCBI tax ID: 1127673

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aliiglaciecola lipolytica E3GCA_000314975contigncbi1127673
66792Aliiglaciecola lipolytica E32531839189draftimg1127673

GC content

@refGC-contentmethod
2888440.8
6777040.8thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidence
125439BacteriaNetspore_formationAbility to form endo- or exosporesno96.7
125439BacteriaNetmotilityAbility to perform movementyes54.2
125439BacteriaNetgram_stainReaction to gram-stainingnegative97.2
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe99.3

External links

@ref: 28884

culture collection no.: CGMCC 1.7001, JCM 15139

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19126727Glaciecola lipolytica sp. nov., isolated from seawater near Tianjin city, China.Chen LP, Xu HY, Fu SZ, Fan HX, Liu YH, Liu SJ, Liu ZPInt J Syst Evol Microbiol10.1099/ijs.0.000489-02009Alteromonadaceae/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/genetics, Fatty Acids/analysis, Genes, rRNA, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Species SpecificityPhenotype
Phylogeny23315410Reclassification of [Glaciecola] lipolytica and [Aestuariibacter] litoralis in Aliiglaciecola gen. nov., as Aliiglaciecola lipolytica comb. nov. and Aliiglaciecola litoralis comb. nov., respectively.Jean WD, Hsu CY, Huang SP, Chen JS, Lin S, Su MH, Shieh WYInt J Syst Evol Microbiol10.1099/ijs.0.045625-02013Alteromonadaceae/*classification/genetics/growth & development, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Nitrates/metabolism, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNATranscriptome
Phylogeny25216983Aliiglaciecola coringensis sp. nov., isolated from a water sample collected from mangrove forest in Coringa, Andhra Pradesh, India.Gupta V, Sharma G, Srinivas TN, Anil Kumar PAntonie Van Leeuwenhoek10.1007/s10482-014-0279-02014Aerobiosis, Alteromonadaceae/*classification/*isolation & purification, Bacterial Typing Techniques, Base Composition, Chromatography, Thin Layer, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, India, Locomotion, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, *Water MicrobiologyGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
28884Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172532428776041
30838Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172716828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG