Strain identifier

BacDive ID: 133403

Type strain: Yes

Species: Acinetobacter larvae

Strain Designation: BRTC-1

Strain history: Y. Wang; Biogas Inst. of Min. of Agric., CAAS, China; BRTC-1.

NCBI tax ID(s): 1789224 (species)

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General

@ref: 25280

BacDive-ID: 133403

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, coccus-shaped, colony-forming

description: Acinetobacter larvae BRTC-1 is an aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from gut of O. fuscidentalis.

NCBI tax id

  • NCBI tax id: 1789224
  • Matching level: species

strain history

  • @ref: 67770
  • history: Y. Wang; Biogas Inst. of Min. of Agric., CAAS, China; BRTC-1.

doi: 10.13145/bacdive133403.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter larvae
  • full scientific name: Acinetobacter larvae Liu et al. 2017

@ref: 25280

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter larvae

strain designation: BRTC-1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
25280negative0.5-1.1 µm0.2-0.8 µmcoccus-shapedno
69480no90.606
69480negative99.991

colony morphology

  • @ref: 25280
  • colony size: 1.0-3.0 mm
  • colony color: milky-yellow
  • colony shape: circular
  • incubation period: 3 days
  • medium used: tryptic soy agar (TSA)

Culture and growth conditions

culture medium

  • @ref: 25280
  • name: tryptic soy agar (TSA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25280positivegrowth10-45
25280positiveoptimum30-35mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
25280positivegrowth5.0-9.0alkaliphile
25280positiveoptimum6

Physiology and metabolism

oxygen tolerance

  • @ref: 25280
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
25280no
69481no100
69480no99.986

halophily

@refsaltgrowthtested relationconcentration
25280NaClpositivegrowth0.0-5.0 %(w/v)
25280NaCloptimum0 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
25280391504-oxopentanoate-growth
2528078208azelaate-growth
25280casein-hydrolysis
2528030719citraconate-growth
2528018391D-gluconate-growth
2528017634D-glucose-growth
2528016988D-ribose-growth
252804853esculin-hydrolysis
252805291gelatin-hydrolysis
2528058044gentisate-growth
2528017234glucose-fermentation
2528018295histamine-growth
2528030849L-arabinose-growth
2528015603L-leucine-growth
2528017295L-phenylalanine-growth
2528030924L-tartrate-growth
2528017632nitrate-reduction
2528018401phenylacetate-growth
2528028017starch-hydrolysis
2528062517tricarballylate-growth
2528018123trigonelline-growth
2528016765tryptamine-growth
25280620642,3-butanediol+carbon source
2528016865gamma-aminobutyric acid+carbon source
25280178794-hydroxybenzoate+carbon source
2528030089acetate+carbon source
2528017128adipate+carbon source
2528016150benzoate+carbon source
2528016958beta-alanine+carbon source
2528016947citrate+carbon source
2528017634D-glucose+builds acid from
2528015588D-malate+carbon source
2528016236ethanol+carbon source
2528017859glutaric acid+carbon source
2528016467L-arginine+carbon source
2528029991L-aspartate+carbon source
2528015971L-histidine+carbon source
2528015729L-ornithine+carbon source
2528024996lactate+carbon source
2528015792malonate+carbon source
2528017148putrescine+carbon source
2528015708trans-aconitate+carbon source

metabolite production

@refChebi-IDmetaboliteproduction
2528016136hydrogen sulfideno
2528035581indoleno
2528015688acetoinyes

metabolite tests

  • @ref: 25280
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
25280acid phosphatase+3.1.3.2
25280alkaline phosphatase+3.1.3.1
25280catalase+1.11.1.6
25280cytochrome oxidase-1.9.3.1
25280esterase (C 4)+
25280esterase Lipase (C 8)+
25280lipase (C 14)+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25280C12:06.6
    25280C12:0 2OH2.4
    25280C12:0 3OH6.2
    25280C16:016.9
    25280C16:1ω7c / C15:0 iso 2OH15.3
    25280C17:0 10-methyl2.3
    25280C18:04
    25280C18:1ω9c40.6
    25280C18:3ω6c1.4
  • type of FA analysis: whole cell analysis
  • incubation medium: Tryptic soy agar (TSA)
  • agar/liquid: agar
  • incubation temperature: 30
  • incubation time: 1
  • software version: Sherlock 6.0
  • library/peak naming table: TSBA 4.0
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture durationenrichment culture temperatureisolation procedurehost species
25280gut of O. fuscidentalisXishuangbanna DaiChinaCHNAsiatryptic soy agar (TSA, BD/Difco)36 hours30serial dilution technique
67770Gut of Omphisa fuscidentalis Hampson, which is a larva of a mothXishuangbanna Dai Autonomous Pref.ChinaCHNAsiaOmphisa fuscidentalis

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Insecta
#Host Body-Site#Gastrointestinal tract#Stomach

Sequence information

16S sequences

  • @ref: 25280
  • description: Acinetobacter sp. BRTC-1 16S ribosomal RNA gene, partial sequence
  • accession: KU560468
  • length: 1524
  • database: nuccore
  • NCBI tax ID: 1789224

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter larvae BRTC-1GCA_001704115completencbi1789224
66792Acinetobacter sp. BRTC-11789224.3completepatric1789224
66792Acinetobacter larvae BRTC-12767802241completeimg1789224

GC content

@refGC-contentmethod
2528041.6sequence analysis
6777041.6genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno95.886yes
gram-positiveno97.6yes
anaerobicno98.526yes
halophileno86.642no
spore-formingno96.538yes
glucose-utilno83.991yes
aerobicyes90.176yes
thermophileno99.856yes
motileno91.279yes
glucose-fermentno90.257yes

External links

@ref: 25280

culture collection no.: ACCC 19936, JCM 31367

literature

  • topic: Phylogeny
  • Pubmed-ID: 27902257
  • title: Acinetobacter larvae sp. nov., isolated from the larval gut of Omphisa fuscidentalis.
  • authors: Liu S, Wang Y, Ruan Z, Ma K, Wu B, Xu Y, Wang J, You Y, He M, Hu G
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001644
  • year: 2017
  • mesh: Acinetobacter/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Larva/microbiology, Moths/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25280S. W. Liu, Y.,Ruan, Z.,Ma, K.,Wu, B.,Xu, Y.,Wang, J.,You, Y.,He, M.,Hu, G.Acinetobacter larvae sp. nov., isolated from the larval gut of Omphisa fuscidentalis10.1099/ijsem.0.001644IJSEM 67: 806-811 201727902257
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1