Strain identifier

BacDive ID: 133394

Type strain: Yes

Species: Euzebyella marina

Strain history: <- Yan-Jiao Zhang, Qingdao Agricultural Univ.

NCBI tax ID(s): 1761453 (species)

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General

@ref: 25271

BacDive-ID: 133394

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Euzebyella marina CCTCC AB 2014348 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from seawater from the Yellow Sea.

NCBI tax id

  • NCBI tax id: 1761453
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Yan-Jiao Zhang, Qingdao Agricultural Univ.

doi: 10.13145/bacdive133394.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Euzebyella
  • species: Euzebyella marina
  • full scientific name: Euzebyella marina Zhang et al. 2017

@ref: 25271

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Euzebyella

species: Euzebyella marina

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
25271negative0.8-4.3 µm0.3-0.6 µmrod-shapedno
67771rod-shaped
67771negative

colony morphology

  • @ref: 25271
  • colony size: 1.2-2.0 mm
  • colony color: yellow
  • colony shape: circular
  • incubation period: 4 days
  • medium used: TYS agar

pigmentation

  • @ref: 25271
  • production: no
  • name: Flexirubin-type

Culture and growth conditions

culture medium

  • @ref: 25271
  • name: TYS agar
  • growth: yes
  • composition: 0.5 % tryptone, 0.1 % yeast extract, 1.5 % agar and artificial sea water prepared according to another formula (designated ASW2: containing 0.0002 % NH4NO3, 0.0027 % H3BO3, 0.1 % CaCl2, 0.0001 % FePO4, 0.5 % MgCl2, 0.01 % KBr, 0.1 % KCl, 0.02 % NaHCO3, 2.4 % NaCl, 0.0003 % NaF, 0.0002 % Na2SiO3, 0.4 % Na2SO4, 0.0026 % SrCl and distilled water)

culture temp

@refgrowthtypetemperaturerange
25271positivegrowth15-37
25271positiveoptimum30mesophilic
25271inconsistentgrowth37mesophilic
67771positivegrowth28mesophilic

culture pH

@refabilitytypepH
25271positivegrowth5-8
25271positiveoptimum6.5-7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
25271aerobe
67771aerobe

halophily

@refsalttested relationconcentrationgrowth
25271NaCloptimum0.5-3.5 %
25271NaClgrowth0.5-12 %(w/v)positive

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2527115589L-malate-respiration
25271167632-oxobutanoate-respiration
252712-oxogluconate-builds acid from
25271739183-O-methyl-D-glucose-respiration
2527116865gamma-aminobutyric acid-respiration
25271181014-hydroxyphenylacetic acid-respiration
25271581435-dehydro-D-gluconate-builds acid from
2527117128adipate-assimilation
2527122599arabinose-assimilation
2527173706bromosuccinate-respiration
2527117968butyrate-assimilation
25271casein-hydrolysis
2527116947citrate-assimilation
2527115963ribitol-builds acid from
2527130612D-glucarate-respiration
2527116523D-serine-respiration
2527117924D-sorbitol-builds acid from
2527117113erythritol-builds acid from
2527115740formate-respiration
2527116813galactitol-builds acid from
252715291gelatin-hydrolysis
2527124265gluconate-builds acid from
2527117234glucose-builds acid from
2527117234glucose-assimilation
2527117754glycerol-respiration
2527117596inosine-respiration
2527117268myo-inositol-builds acid from
2527115443inulin-builds acid from
2527116977L-alanine-respiration
2527115971L-histidine-respiration
2527117115L-serine-respiration
2527117266L-sorbose-builds acid from
2527165328L-xylose-builds acid from
2527125115malate-assimilation
2527117306maltose-assimilation
2527129864mannitol-assimilation
2527137684mannose-assimilation
2527174863methyl beta-D-xylopyranoside-builds acid from
25271506227N-acetylglucosamine-assimilation
25271506227N-acetylglucosamine-builds acid from
2527135418n-acetylneuraminate-respiration
2527117632nitrate-reduction
2527118401phenylacetate-assimilation
2527132032potassium gluconate-assimilation
2527117272propionate-respiration
2527128017starch-hydrolysis
2527153423tween 40-hydrolysis
2527153425tween 60-hydrolysis
2527153426tween 80-hydrolysis
2527117151xylitol-builds acid from
2527130089acetate+respiration
2527117925alpha-D-glucose+respiration
2527136219alpha-lactose+respiration
2527117057cellobiose+builds acid from
2527117057cellobiose+respiration
2527115824D-fructose+builds acid from
2527115824D-fructose+respiration
2527128847D-fucose+builds acid from
2527112936D-galactose+respiration
2527118024D-galacturonic acid+respiration
2527117634D-glucose+builds acid from
2527115748D-glucuronate+respiration
2527116899D-mannitol+builds acid from
2527116024D-mannose+builds acid from
2527116024D-mannose+respiration
2527165327D-xylose+builds acid from
2527123652dextrin+respiration
252714853esculin+hydrolysis
252714853esculin+builds acid from
2527128066gentiobiose+respiration
2527117754glycerol+builds acid from
2527170744glycine-proline+respiration
2527128087glycogen+builds acid from
2527130849L-arabinose+builds acid from
2527116467L-arginine+respiration
2527129991L-aspartate+respiration
2527118287L-fucose+respiration
2527129985L-glutamate+respiration
2527162345L-rhamnose+builds acid from
2527162345L-rhamnose+respiration
2527117306maltose+builds acid from
2527117306maltose+respiration
2527128053melibiose+builds acid from
2527128053melibiose+respiration
25271320055methyl beta-D-glucopyranoside+respiration
2527128037N-acetylgalactosamine+respiration
25271506227N-acetylglucosamine+respiration
2527117309pectin+respiration
2527116634raffinose+respiration
2527117814salicin+respiration
2527117164stachyose+respiration
2527128017starch+builds acid from
2527117992sucrose+builds acid from
2527117992sucrose+respiration
2527127082trehalose+builds acid from
2527127082trehalose+respiration
2527132528turanose+builds acid from
2527132528turanose+respiration
2527116004(R)-lactate+/-respiration
2527115588D-malate+/-respiration
2527116651(S)-lactate+/-respiration
25271645522-hydroxybutyrate+/-respiration
25271309162-oxoglutarate+/-respiration
2527113705acetoacetate+/-respiration
2527136219alpha-lactose+/-builds acid from
2527127613amygdalin+/-builds acid from
2527118305arbutin+/-builds acid from
2527116947citrate+/-respiration
2527117108D-arabinose+/-builds acid from
2527118333D-arabitol+/-builds acid from
2527118333D-arabitol+/-respiration
2527129990D-aspartate+/-respiration
2527178697D-fructose 6-phosphate+/-respiration
2527128847D-fucose+/-respiration
2527112936D-galactose+/-builds acid from
252718391D-gluconate+/-respiration
2527114314D-glucose 6-phosphate+/-respiration
2527162318D-lyxose+/-builds acid from
2527116899D-mannitol+/-respiration
2527116988D-ribose+/-builds acid from
2527117924D-sorbitol+/-respiration
2527116443D-tagatose+/-builds acid from
25271370543-hydroxybutyrate+/-respiration
2527116537galactarate+/-respiration
252715291gelatin+/-respiration
2527128066gentiobiose+/-builds acid from
2527132323glucuronamide+/-respiration
2527117268myo-inositol+/-respiration
2527118403L-arabitol+/-builds acid from
2527118287L-fucose+/-builds acid from
2527117464L-galactonic acid gamma-lactone+/-respiration
2527118183L-pyroglutamic acid+/-respiration
252716731melezitose+/-builds acid from
2527174611methyl (R)-lactate+/-respiration
25271320061methyl alpha-D-glucopyranoside+/-builds acid from
2527143943methyl alpha-D-mannoside+/-builds acid from
2527151850methyl pyruvate+/-respiration
2527163154N-acetyl-beta-D-mannosamine+/-respiration
2527126490quinate+/-respiration
2527116634raffinose+/-builds acid from
2527117814salicin+/-builds acid from
2527153423tween 40+/-respiration

metabolite production

  • @ref: 25271
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
25271acid phosphatase+3.1.3.2
25271alkaline phosphatase+3.1.3.1
25271alpha-chymotrypsin-3.4.21.1
25271alpha-fucosidase+3.2.1.51
25271alpha-galactosidase+/-3.2.1.22
25271alpha-glucosidase+/-3.2.1.20
25271alpha-mannosidase+/-3.2.1.24
25271arginine dihydrolase-3.5.3.6
25271beta-galactosidase+3.2.1.23
25271beta-glucosidase+/-3.2.1.21
25271beta-glucuronidase-3.2.1.31
25271catalase+1.11.1.6
25271cystine arylamidase+/-3.4.11.3
25271cytochrome oxidase+1.9.3.1
25271esterase (C 4)+/-
25271esterase Lipase (C 8)+
25271leucine arylamidase+3.4.11.1
25271lipase (C 14)-
25271N-acetyl-beta-glucosaminidase+3.2.1.52
25271naphthol-AS-BI-phosphohydrolase+/-
25271trypsin+3.4.21.4
25271urease-3.5.1.5
25271valine arylamidase+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
25271seawater from the Yellow SeaYellow Sea, ChinaChinaCHNAsia36121
67771From seawaterthe Yellow SeaChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Sequence information

16S sequences

  • @ref: 25271
  • description: 16S rRNA gene sequences
  • accession: KU174197
  • length: 1489
  • database: ena
  • NCBI tax ID: 1761453

Genome sequences

  • @ref: 66792
  • description: Euzebyella marina strain CY01
  • accession: 1761453.5
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 1761453

GC content

@refGC-contentmethod
2527138.2high performance liquid chromatography (HPLC)
6777138.2

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno89.873yes
gram-positiveno97.743yes
anaerobicno99.47yes
aerobicyes90.302no
halophileno74.383no
spore-formingno95.569no
thermophileno99.614no
glucose-utilyes85.303no
flagellatedno94.913no
glucose-fermentno90.328no

External links

@ref: 25271

culture collection no.: CCTCC AB 2014348, KCTC 42440, CY 01

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27911255Euzebyella marina sp. nov., isolated from seawater.Zhang YJ, Zhao JR, Zhang XY, Chen GZ, Zhou MY, Mo XH, He HL, Chen SInt J Syst Evol Microbiol10.1099/ijsem.0.0017122017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny29458477Euzebyella algicola sp. nov., a marine bacterium of the family Flavobacteriaceae, isolated from green algae.Kwon YM, Kim KW, Kim JYH, Choi TY, Yang SH, Oh CH, Kwon KK, Kim SJInt J Syst Evol Microbiol10.1099/ijsem.0.0025812018Bacterial Typing Techniques, Base Composition, Chlorophyta/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny33300861Pareuzebyella sediminis gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae, isolated from a tidal flat sediment.Huang Z, Wei X, Lai Q, Chen S, Yuan JInt J Syst Evol Microbiol10.1099/ijsem.0.0046062020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Geologic Sediments/*microbiology, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25271Y. J. Z. Zhang, J. R.,Zhang, X. Y.,Chen, G. Z.,Zhou, M. Y.,Mo, X. H.,He, H. L.,Chen, S.Euzebyella marina sp. nov., isolated from seawater10.1099/ijsem.0.001712IJSEM 67: 920-924 201727911255
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc