Strain identifier

BacDive ID: 133379

Type strain: Yes

Species: Brevundimonas balnearis

Strain Designation: FDRGB2b

Strain history: <- E. Toth, Eötvös Loránd Univ. Budapest, Hungary; FDRGB2b <- S. Szuróczki and Z. Kéki

NCBI tax ID(s): 1572858 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 64145

BacDive-ID: 133379

DSM-Number: 29841

keywords: 16S sequence, Bacteria, aerobe, motile, rod-shaped, colony-forming

description: Brevundimonas balnearis FDRGB2b is an aerobe, motile, rod-shaped bacterium that forms circular colonies and was isolated from well water of a thermal bath at Budapest.

NCBI tax id

  • NCBI tax id: 1572858
  • Matching level: species

strain history

  • @ref: 64145
  • history: <- E. Toth, Eötvös Loránd Univ. Budapest, Hungary; FDRGB2b <- S. Szuróczki and Z. Kéki

doi: 10.13145/bacdive133379.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Caulobacterales
  • family: Caulobacteraceae
  • genus: Brevundimonas
  • species: Brevundimonas balnearis
  • full scientific name: Brevundimonas balnearis Tóth et al. 2017

@ref: 64145

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Caulobacteraceae

genus: Brevundimonas

species: Brevundimonas balnearis

full scientific name: Brevundimonas balnearis Tóth et al. 2017

strain designation: FDRGB2b

type strain: yes

Morphology

cell morphology

  • @ref: 25252
  • cell length: 1.5-3.5 µm
  • cell width: 0.3-0.7 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: polar

colony morphology

  • @ref: 25252
  • colony size: 1-2 mm
  • colony color: mango yellow
  • colony shape: circular
  • medium used: R2A

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
25252Reasoner's 2A agar (R2A)yes
25252Trypticase Soy Agar (TSA)no
641451/10 R2A MEDIUM (DSMZ Medium 1578)yeshttps://mediadive.dsmz.de/medium/1578Name: 1/10 R2A MEDIUM (DSMZ Medium 1578) Composition: Agar 15.0 g/l Casamino acids 0.05 g/l Starch 0.05 g/l Glucose 0.05 g/l Proteose peptone 0.05 g/l Yeast extract 0.05 g/l K2HPO4 0.03 g/l Na-pyruvate 0.03 g/l MgSO4 x 7 H2O 0.005 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
25252positivegrowth10-45
25252positiveoptimum20-30
64145positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
25252positivegrowth7.0-10.0alkaliphile
25252positiveoptimum8.0-9.0

Physiology and metabolism

oxygen tolerance

  • @ref: 25252
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
25252NaClpositivegrowth0-1 %(w/v)
25252NaCloptimum0-1 %(w/v)

observation

  • @ref: 25252
  • observation: Stalk formation

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
25252168082-dehydro-D-gluconate-builds acid from
25252581435-dehydro-D-gluconate-builds acid from
2525227613amygdalin-builds acid from
2525218305arbutin-builds acid from
25252casein-hydrolysis
2525215963ribitol-builds acid from
2525217108D-arabinose-builds acid from
2525218333D-arabitol-builds acid from
2525217057cellobiose-builds acid from
2525215824D-fructose-builds acid from
2525228847D-fucose-builds acid from
2525212936D-galactose-builds acid from
2525217634D-glucose-builds acid from
2525217716lactose-builds acid from
2525262318D-lyxose-builds acid from
2525217306maltose-builds acid from
2525216899D-mannitol-builds acid from
2525216024D-mannose-builds acid from
252526731melezitose-builds acid from
2525228053melibiose-builds acid from
2525216634raffinose-builds acid from
2525216988D-ribose-builds acid from
2525217992sucrose-builds acid from
2525217924D-sorbitol-builds acid from
2525216443D-tagatose-builds acid from
2525216551D-trehalose-builds acid from
2525232528turanose-builds acid from
2525265327D-xylose-builds acid from
2525217113erythritol-builds acid from
252524853esculin-builds acid from
2525216813galactitol-builds acid from
2525228066gentiobiose-builds acid from
2525224265gluconate-builds acid from
2525217754glycerol-builds acid from
2525228087glycogen-builds acid from
2525217268myo-inositol-builds acid from
2525215443inulin-builds acid from
2525230849L-arabinose-builds acid from
2525218403L-arabitol-builds acid from
2525218287L-fucose-builds acid from
2525262345L-rhamnose-builds acid from
2525217266L-sorbose-builds acid from
2525265328L-xylose-builds acid from
25252320061methyl alpha-D-glucopyranoside-builds acid from
2525243943methyl alpha-D-mannoside-builds acid from
2525274863methyl beta-D-xylopyranoside-builds acid from
25252506227N-acetylglucosamine-builds acid from
2525217632nitrate-reduction
2525217814salicin-builds acid from
2525228017starch-builds acid from
2525228017starch-hydrolysis
2525253426tween 80-hydrolysis
2525217151xylitol-builds acid from
252524853esculin+hydrolysis
252525291gelatin+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantis sensitivegroup ID
252522676amoxicillinyesyes
2525218208penicillin gyesyes
252528309polymyxin byesyes
252523745clindamycinyesyes
2525228971ampicillinyesyes
252527528netilmycinyesyes
25252471744imipenemyesyes
2525228001vancomycinyesyes
25252209807cefoxitinyesyes
2525263607linezolidyesyes
252527507neomycinyesyes
252528232piperacillinyesyes16
252529421tazobactamyesyes16
2525228864tobramycinyesyes
2525217833gentamicinyesyes
252523393carbenicillinyesyes
252523515cefuroximeyesyes
2525243968meropenemyesyes
2525248923erythromycinyesyes
25252100241ciprofloxacinyesyes
252523480cefamandoleyesyes

metabolite production

  • @ref: 25252
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
25252acid phosphatase+/-3.1.3.2
25252alkaline phosphatase+3.1.3.1
25252alpha-Amylase+3.2.1.1
25252alpha-chymotrypsin+/-3.4.21.1
25252alpha-fucosidase-3.2.1.51
25252alpha-galactosidase-3.2.1.22
25252alpha-glucosidase+3.2.1.20
25252beta-galactosidase-3.2.1.23
25252beta-glucosidase-3.2.1.21
25252beta-glucuronidase-3.2.1.31
25252beta-mannosidase-3.2.1.25
25252cystine arylamidase+/-3.4.11.3
25252esterase (C 4)+
25252esterase Lipase (C 8)+
25252gelatinase+
25252leucine arylamidase+3.4.11.1
25252lipase (C 14)-
25252N-acetyl-beta-glucosaminidase-3.2.1.52
25252naphthol-AS-BI-phosphohydrolase+
25252phosphatase+
25252phosphohydrolase+
25252valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25252C12:0 3OH1.7
    25252C14:03.8
    25252C15:02.2
    25252C16:012.7
    25252C16:1ω7c3.1
    25252C17:01.1
    25252C17:1ω6c2.2
    25252C17:1ω8c2.5
    25252C18:1ω7c69
  • type of FA analysis: whole cell analysis
  • incubation medium: 10% R2A
  • agar/liquid: agar
  • incubation temperature: 28
  • incubation time: 3
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA 40
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
25252well water of a thermal bath (Gellért bath) at BudapestBudapest, HungaryHungaryHUNEurope2013-10-28
64145well water of a thermal bathBudapest, Gellért thermal bathHungaryHUNEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_72644.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_73;96_180;97_34035;98_50898;99_72644&stattab=map
  • Last taxonomy: Brevundimonas balnearis subclade
  • 16S sequence: LN651199
  • Sequence Identity:
  • Total samples: 4240
  • soil counts: 444
  • aquatic counts: 2336
  • animal counts: 1074
  • plant counts: 386

Safety information

risk assessment

  • @ref: 64145
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 64145
  • description: Brevundimonas sp. FDRGB2b partial 16S rRNA gene, strain FDRGB2b, isolate 2
  • accession: LN651199
  • length: 1399
  • database: ena
  • NCBI tax ID: 1572858

GC content

  • @ref: 64145
  • GC-content: 69.8
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 64145

culture collection no.: DSM 29841, NCAIM B.02621

straininfo link

  • @ref: 91419
  • straininfo: 403124

literature

  • topic: Phylogeny
  • Pubmed-ID: 27995874
  • title: Brevundimonas balnearis sp. nov., isolated from the well water of a thermal bath.
  • authors: Toth E, Szuroczki S, Keki Z, Kosztik J, Makk J, Boka K, Sproer C, Marialigeti K, Schumann P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001746
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, Caulobacteraceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hungary, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Temperature, Ubiquinone/analogs & derivatives/chemistry, *Water Microbiology, *Water Wells
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25252E. S. Tóth, S.,Kéki, Z.,Kosztik, J.,Makk, J.,Bóka, K.,Spröer, C.,Márialigeti, K.,Schumann, P.Brevundimonas balnearis sp. nov., isolated from the well water of a thermal bath10.1099/ijsem.0.001746IJSEM 67: 1033-1038 201727995874
64145Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29841Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29841)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91419Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403124.1