Strain identifier

BacDive ID: 133366

Type strain: Yes

Species: Myroides cloacae

Strain Designation: wh15

Strain history: H. Liu; Anhui Normal Univ., China; wh15.

NCBI tax ID(s): 1852970 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 8.1 (current version)

General

@ref: 25222

BacDive-ID: 133366

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Myroides cloacae wh15 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from waste water.

NCBI tax id

  • NCBI tax id: 1852970
  • Matching level: species

strain history

  • @ref: 67770
  • history: H. Liu; Anhui Normal Univ., China; wh15.

doi: 10.13145/bacdive133366.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Myroides
  • species: Myroides cloacae
  • full scientific name: Myroides cloacae (Liu et al. 2017) García-López et al. 2020

  • synonyms

    @refsynonym
    20215Paenimyroides cloacae
    20215Flavobacterium cloacae

@ref: 25222

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium cloacae

strain designation: wh15

type strain: yes

Morphology

cell morphology

  • @ref: 25222
  • gram stain: negative
  • cell length: 1.0-1.5 µm
  • cell width: 0.5-0.8 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 25222
  • colony color: yellow
  • colony shape: circular
  • medium used: LB agar

pigmentation

@refproductionname
25222yesFlexirubin-type
25222noCongo red

Culture and growth conditions

culture medium

  • @ref: 25222
  • name: Luria-Bertani medium
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25222positivegrowth15.0-45.0
25222positiveoptimum25.0-40.0
25222nogrowth10psychrophilic
25222nogrowth50thermophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepH
25222positivegrowth5.0-8.0
25222positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 25222
  • oxygen tolerance: aerobe

spore formation

  • @ref: 25222
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
25222NaClpositivegrowth0.0-4.0 %
25222NaCloptimum1.0-2.0 %
25222NaClnogrowth5 %

observation

  • @ref: 67770
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
25222168082-dehydro-D-gluconate-builds acid from
25222581435-dehydro-D-gluconate-builds acid from
2522227613amygdalin-builds acid from
2522218305arbutin-builds acid from
2522217057cellobiose-builds acid from
2522215963ribitol-builds acid from
2522217108D-arabinose-builds acid from
2522218333D-arabitol-builds acid from
2522215824D-fructose-builds acid from
2522228847D-fucose-builds acid from
2522212936D-galactose-builds acid from
2522217634D-glucose-builds acid from
2522262318D-lyxose-builds acid from
2522216899D-mannitol-builds acid from
2522216024D-mannose-builds acid from
2522216988D-ribose-builds acid from
2522217924D-sorbitol-builds acid from
2522216443D-tagatose-builds acid from
2522265327D-xylose-builds acid from
2522217113erythritol-builds acid from
25222esculin ferric citrate-builds acid from
2522216813galactitol-builds acid from
2522228066gentiobiose-builds acid from
2522217754glycerol-builds acid from
2522228087glycogen-builds acid from
2522217268myo-inositol-builds acid from
2522215443inulin-builds acid from
2522230849L-arabinose-builds acid from
2522218403L-arabitol-builds acid from
2522218287L-fucose-builds acid from
2522262345L-rhamnose-builds acid from
2522217266L-sorbose-builds acid from
2522265328L-xylose-builds acid from
252226731melezitose-builds acid from
2522228053melibiose-builds acid from
25222320061methyl alpha-D-glucopyranoside-builds acid from
2522243943methyl alpha-D-mannoside-builds acid from
2522274863methyl beta-D-xylopyranoside-builds acid from
25222506227N-acetylglucosamine-builds acid from
2522232032potassium gluconate-builds acid from
2522216634raffinose-builds acid from
2522217814salicin-builds acid from
2522228017starch-builds acid from
2522217992sucrose-builds acid from
2522227082trehalose-builds acid from
2522227897tryptophan-energy source
2522232528turanose-builds acid from
2522253424tween 20-hydrolysis
2522253423tween 40-hydrolysis
2522253426tween 80-hydrolysis
2522217151xylitol-builds acid from
2522228938ammonium+nitrogen source
2522216947citrate+carbon source
2522217306maltose+builds acid from
2522216991dna+hydrolysis
252225291gelatin+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
2522215688acetoinno
2522216136hydrogen sulfideno
2522235581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testcitrate test
2522215688acetoin-
2522235581indole-
2522216947citrate+

enzymes

@refvalueactivityec
25222acid phosphatase+3.1.3.2
25222alkaline phosphatase+3.1.3.1
25222alpha-chymotrypsin+3.4.21.1
25222alpha-fucosidase-3.2.1.51
25222alpha-galactosidase-3.2.1.22
25222alpha-glucosidase-3.2.1.20
25222alpha-mannosidase-3.2.1.24
25222arginine dihydrolase+3.5.3.6
25222beta-galactosidase-3.2.1.23
25222beta-glucosidase-3.2.1.21
25222beta-glucuronidase-3.2.1.31
25222catalase+1.11.1.6
25222cystine arylamidase+3.4.11.3
25222cytochrome oxidase+1.9.3.1
25222esterase (C 4)+
25222esterase Lipase (C 8)+
25222gelatinase+
25222leucine arylamidase+3.4.11.1
25222lipase (C 14)+
25222lysine decarboxylase-4.1.1.18
25222N-acetyl-beta-glucosaminidase-3.2.1.52
25222naphthol-AS-BI-phosphohydrolase+
25222ornithine decarboxylase-4.1.1.17
25222trypsin+3.4.21.4
25222tryptophan deaminase-4.1.99.1
25222urease-3.5.1.5
25222valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25222C15:0 anteiso3.9
    25222C13:0 3OH / C15:1 isoH0.5
    25222C15:0 3OH0.6
    25222C16:0 3OH0.6
    25222C16:1ω7c / C16:1ω6c10.5
    25222C17:1ω9c / 10-Methyl C-16:012
    25222is0-C15:048.9
    25222C13:0 iso0.7
    25222C14:0 iso1
    25222C15:0 iso 3OH5.3
    25222C16:0 iso2.1
    25222C16:0 iso 3OH1.3
    25222C17:0 iso 3OH10.1
  • type of FA analysis: whole cell analysis
  • incubation medium: LB
  • agar/liquid: agar
  • incubation temperature: 30
  • incubation time: 2
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture temperature
25222waste watermunicipal wastewater treatment plant in Wuhu, AnhuiRepublic of ChinaCHNAsiaLuria-Bertani medium30
67770Waste water of a municipal wastewater treatment plant in WuhuChinaCHNAsia

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Waste
  • Cat3: #Wastewater

Sequence information

16S sequences

  • @ref: 25222
  • description: Flavobacterium sp. wh15 16S ribosomal RNA gene, partial sequence
  • accession: KU746272
  • length: 1479
  • database: nuccore
  • NCBI tax ID: 1852970

GC content

  • @ref: 67770
  • GC-content: 32.3
  • method: genome sequence analysis

External links

@ref: 25222

culture collection no.: CCTCC AB 2015420, JCM 31173

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25222H. L. Liu, P.,Zhu, G.Flavobacterium cloacae sp. nov., isolated from waste water10.1099/ijsem.0.001684IJSEM 67: 659-663 201727902305
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/