Strain identifier

BacDive ID: 133364

Type strain: Yes

Species: Hymenobacter seoulensis

Strain Designation: 16F7G

Strain history: <- Hee-Young Jung, Kyungpook National Univ.

NCBI tax ID(s): 1867106 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 8.1 (current version)

General

@ref: 25224

BacDive-ID: 133364

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, pigmented

description: Hymenobacter seoulensis 16F7G is an aerobe, Gram-negative, rod-shaped bacterium that has a pink pigmentation and was isolated from a water sample collected from the Han River in Seoul.

NCBI tax id

  • NCBI tax id: 1867106
  • Matching level: species

strain history

@refhistory
67770H.-Y. Jung; Kyungpook Natl. Univ., South Korea; 16F7G.
67771<- Hee-Young Jung, Kyungpook National Univ.

doi: 10.13145/bacdive133364.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Hymenobacteraceae
  • genus: Hymenobacter
  • species: Hymenobacter seoulensis
  • full scientific name: Hymenobacter seoulensis Lee et al. 2017

@ref: 25224

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Hymenobacteraceae

genus: Hymenobacter

species: Hymenobacter seoulensis

strain designation: 16F7G

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
25224negative2.6 µm1 µmrod-shapedno
67771rod-shapedno
67771negative

colony morphology

  • @ref: 25224
  • colony color: pink
  • incubation period: 3 days

pigmentation

  • @ref: 25224
  • production: yes
  • color: pink

Culture and growth conditions

culture medium

@refnamegrowth
25224NA (nutrient agar)yes
25224Reasoner's 2A agar (R2A)yes

culture temp

@refgrowthtypetemperaturerange
25224positivegrowth15-37
25224positiveoptimum25mesophilic
25224nogrowth4psychrophilic
25224nogrowth10psychrophilic
25224inconsistentgrowth30mesophilic
25224inconsistentgrowth37mesophilic
25224nogrowth42thermophilic
67770positivegrowth25mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
25224positivegrowth4-7acidophile
25224positiveoptimum7
25224positivegrowth4
25224positivegrowth5
25224nogrowth8
25224nogrowth9
25224nogrowth10

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
25224aerobe
67771aerobe

halophily

@refsalttested relationconcentrationgrowth
25224NaCloptimum0 %
25224NaClgrowth0.5 %(w/v)positive
25224NaClgrowth1 %(w/v)no
25224NaClgrowth2 %(w/v)no
25224NaClgrowth3 %(w/v)no
25224NaClgrowth4 %(w/v)no
25224NaClgrowth5 %(w/v)no
25224NaClgrowth10 %(w/v)no

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
252242-oxogluconate-assimilation
252242-oxogluconate-fermentation
252243-hydroxybenzoate-assimilation16193
252244-hydroxybenzoate-assimilation17879
252245-dehydro-D-gluconate-assimilation58143
252245-dehydro-D-gluconate-fermentation58143
25224acetate-assimilation30089
25224amygdalin-fermentation27613
25224butyrate-assimilation17968
25224citrate-assimilation16947
25224ribitol-fermentation15963
25224D-arabinose-fermentation17108
25224D-arabitol-fermentation18333
25224D-fucose-fermentation28847
25224D-lyxose-fermentation62318
25224D-mannitol-assimilation16899
25224D-ribose-assimilation16988
25224D-sorbitol-assimilation17924
25224D-tagatose-fermentation16443
25224D-xylose-fermentation65327
252243-hydroxybutyrate-assimilation37054
25224erythritol-fermentation17113
25224galactitol-fermentation16813
25224gluconate-fermentation24265
25224glycerol-fermentation17754
25224myo-inositol-fermentation17268
25224itaconate-assimilation17240
25224L-alanine-assimilation16977
25224L-arabitol-fermentation18403
25224L-fucose-assimilation18287
25224L-fucose-fermentation18287
25224L-histidine-assimilation15971
25224L-malate-assimilation15589
25224L-rhamnose-fermentation62345
25224L-serine-assimilation17115
25224L-sorbose-fermentation17266
25224L-xylose-fermentation65328
25224lactate-assimilation24996
25224malonate-assimilation15792
25224mannitol-fermentation29864
25224melezitose-fermentation6731
25224melibiose-fermentation28053
25224methyl alpha-D-mannoside-fermentation43943
25224methyl beta-D-xylopyranoside-fermentation74863
25224methyl D-glucoside-fermentation37657
25224N-acetylglucosamine-assimilation506227
25224N-acetylglucosamine-fermentation506227
25224nitrate-reduction17632
25224phenylacetate-assimilation18401
25224propionate-assimilation17272
25224ribose-fermentation33942
25224salicin-fermentation17814
25224sorbitol-fermentation30911
25224suberic acid-assimilation9300
25224turanose-fermentation32528
25224xylitol-fermentation17151
25224adipate+assimilation17128
25224arbutin+fermentation18305
25224cellobiose+fermentation17057
25224D-fructose+fermentation15824
25224D-galactose+fermentation12936
25224D-glucose+assimilation17634
25224lactose+fermentation17716
25224D-mannose+assimilation16024
25224D-mannose+fermentation16024
25224esculin+fermentation4853
25224gelatin+hydrolysis5291
25224gentiobiose+fermentation28066
25224gluconate+assimilation24265
25224glucose+builds acid from17234
25224glycogen+assimilation28087
25224glycogen+fermentation28087
25224myo-inositol+assimilation17268
25224inulin+fermentation15443
25224L-arabinose+assimilation30849
25224L-arabinose+fermentation30849
25224L-proline+assimilation17203
25224L-rhamnose+assimilation62345
25224maltose+assimilation17306
25224maltose+fermentation17306
25224melibiose+assimilation28053
25224raffinose+fermentation16634
25224salicin+assimilation17814
25224starch+fermentation28017
25224sucrose+assimilation17992
25224sucrose+fermentation17992
25224trehalose+fermentation27082

metabolite production

  • @ref: 25224
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
25224acid phosphatase+3.1.3.2
25224alkaline phosphatase+3.1.3.1
25224alpha-chymotrypsin-3.4.21.1
25224alpha-fucosidase-3.2.1.51
25224alpha-galactosidase-3.2.1.22
25224alpha-glucosidase+/-3.2.1.20
25224alpha-mannosidase-3.2.1.24
25224arginine dihydrolase-3.5.3.6
25224beta-galactosidase-3.2.1.23
25224beta-glucosidase+/-3.2.1.21
25224beta-glucosidase-3.2.1.21
25224beta-glucuronidase-3.2.1.31
25224catalase+1.11.1.6
25224cystine arylamidase-3.4.11.3
25224cytochrome oxidase+1.9.3.1
25224esterase (C 4)-
25224esterase Lipase (C 8)+/-
25224leucine arylamidase+3.4.11.1
25224lipase (C 14)-
25224N-acetyl-beta-glucosaminidase-3.2.1.52
25224naphthol-AS-BI-phosphohydrolase+
25224trypsin-3.4.21.4
25224urease-3.5.1.5
25224valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25224C15:0 anteiso9.8
    25224C17:0 anteiso1
    25224C16:02.6
    25224C16:1ω5c11.8
    25224C16:1ω7c / C16:1ω6c18.4
    25224C15:0 iso17
    25224C15:0 iso 3OH2.8
    25224iso-C15:0 H / C13:0 3-OH1
    25224C16:0 iso1.1
    25224C16:1 iso H1.9
    25224C17:0 iso2.8
    25224C17:0 iso 3OH5.2
    25224C17:1 iso I /C17:1 anteiso B19.8
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A
  • agar/liquid: agar
  • incubation temperature: 25
  • incubation time: 3
  • library/peak naming table: TSBA 6
  • system: MIS MIDI
  • method/protocol: Sasser 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
25224a water sample collected from the Han River in SeoulHan River in Seoul, Republic of KoreaRepublic of KoreaKORAsia37126.935
67770Water of the Han River in SeoulRepublic of KoreaKORAsia
67771From waterHan River, SeoulRepublic of KoreaKORAsia37.5278126.935

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #River (Creek)

taxonmaps

  • @ref: 69479
  • File name: preview.99_28480.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_263;96_1043;97_2946;98_21298;99_28480&stattab=map
  • Last taxonomy: Hymenobacter
  • 16S sequence: KU758880
  • Sequence Identity:
  • Total samples: 1158
  • soil counts: 219
  • aquatic counts: 215
  • animal counts: 710
  • plant counts: 14

Sequence information

16S sequences

  • @ref: 25224
  • description: 16S rRNA gene sequences
  • accession: KU758880
  • length: 1468
  • database: ena
  • NCBI tax ID: 1867106

GC content

@refGC-contentmethod
2522456.6high performance liquid chromatography (HPLC)
6777156.6

External links

@ref: 25224

culture collection no.: KCTC 52197, JCM 31655

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27902264Hymenobacter seoulensis sp. nov., isolated from river water.Lee JJ, Lee YH, Park SJ, Lee SY, Park S, Kim MK, Ten LN, Jung HYInt J Syst Evol Microbiol10.1099/ijsem.0.0016682017Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rivers/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny29693542Hymenobacter aquatilis sp. nov., isolated from a mesotrophic artificial lake.Kang H, Cha I, Kim H, Joh KInt J Syst Evol Microbiol10.1099/ijsem.0.0027922018Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes/*microbiology, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25224J. J. L. Lee, Y. H.,Park, S. J.,Lee, S. Y.,Park, S.,Kim, M. K.,Ten, L. N.,Jung, H. Y.Hymenobacter seoulensis sp. nov., isolated from river water10.1099/ijsem.0.001668IJSEM 67: 596-601 201727902264
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/