Strain identifier

BacDive ID: 133352

Type strain: Yes

Species: Croceibacterium soli

Strain Designation: MN-1

NCBI tax ID(s): 1739690 (species)

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General

@ref: 25170

BacDive-ID: 133352

keywords: 16S sequence, Bacteria, obligate aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Croceibacterium soli MN-1 is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from desert sand sample.

NCBI tax id

  • NCBI tax id: 1739690
  • Matching level: species

doi: 10.13145/bacdive133352.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Erythrobacteraceae
  • genus: Croceibacterium
  • species: Croceibacterium soli
  • full scientific name: Croceibacterium soli (Zhao et al. 2017) Xu et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Altererythrobacter soli

@ref: 25170

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Erythrobacteraceae

genus: Altererythrobacter

species: Altererythrobacter soli

strain designation: MN-1

type strain: yes

Morphology

cell morphology

  • @ref: 25170
  • gram stain: negative
  • cell length: 0.9-1.5 µm
  • cell width: 0.3-0.5 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: polar

colony morphology

  • @ref: 25170
  • colony size: 1 mm
  • colony color: ivory
  • colony shape: circular
  • incubation period: 3 days
  • medium used: R2A agar

Culture and growth conditions

culture medium

@refnamegrowth
25170Reasoner's 2A agar (R2A)yes
25170tryptic soy agar (TSA)yes
25170marine agar (MA)yes
25170MacConkey agarno

culture temp

@refgrowthtypetemperaturerange
25170positivegrowth4.0-37.0
25170positiveoptimum28.0-32.0mesophilic

culture pH

@refabilitytypepHPH range
25170positivegrowth6.5-12.0alkaliphile
25170positiveoptimum7.0-9.0

Physiology and metabolism

oxygen tolerance

  • @ref: 25170
  • oxygen tolerance: obligate aerobe

halophily

@refsalttested relationconcentrationgrowth
25170NaCloptimum2 %
25170NaClgrowth0.0-2.0 %(w/v)positive

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2517062968cellulose-hydrolysis
2517012936D-galactose-builds acid from
2517016991dna-hydrolysis
251705291gelatin-hydrolysis
2517030849L-arabinose-builds acid from
2517028017starch-hydrolysis
2517027897tryptophan-energy source
2517016199urea-hydrolysis
25170581435-dehydro-D-gluconate+builds acid from
2517030089acetate+carbon source
2517013705acetoacetate+carbon source
2517015824D-fructose+carbon source
2517078697D-fructose 6-phosphate+carbon source
2517018024D-galacturonic acid+carbon source
2517015748D-glucuronate+carbon source
251704853esculin+hydrolysis
2517032323glucuronamide+carbon source
2517070744glycine-proline+carbon source
2517016977L-alanine+carbon source
2517051850methyl pyruvate+carbon source
2517017632nitrate+reduction
2517017309pectin+carbon source
2517017814salicin+builds acid from
2517017814salicin+carbon source
2517053426tween 80+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitivesensitivity conc.
2517048923erythromycinyesyes15 µg (disc)
2517017334penicillinyesyes10 Unit
2517028971ampicillinyesyes10 µg (disc)

metabolite production

@refChebi-IDmetaboliteproduction
2517016136hydrogen sulfideno
2517035581indoleno

metabolite tests

  • @ref: 25170
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
25170acid phosphatase-3.1.3.2
25170alkaline phosphatase+3.1.3.1
25170alpha-chymotrypsin+3.4.21.1
25170alpha-fucosidase-3.2.1.51
25170alpha-galactosidase-3.2.1.22
25170alpha-glucosidase-3.2.1.20
25170alpha-mannosidase-3.2.1.24
25170beta-galactosidase-3.2.1.23
25170beta-glucosidase+3.2.1.21
25170beta-glucuronidase-3.2.1.31
25170catalase+1.11.1.6
25170cystine arylamidase-3.4.11.3
25170cytochrome oxidase+1.9.3.1
25170esterase (C 4)+
25170esterase Lipase (C 8)+
25170leucine arylamidase+3.4.11.1
25170lipase (C 14)-
25170N-acetyl-beta-glucosaminidase-3.2.1.52
25170naphthol-AS-BI-phosphohydrolase-
25170trypsin+3.4.21.4
25170tryptophan deaminase-4.1.99.1
25170valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    2517011-Methyl C18:1ω7c6.5
    25170C14:0 2OH7.7
    25170C15:0 2OH1.2
    25170C16:09.1
    25170C16:1ω5c1.8
    25170C16:1ω7c / C16:1ω6c28.3
    25170C17:1ω6c4.2
    25170C18:1ω7c35.9
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A
  • agar/liquid: agar
  • incubation temperature: 30
  • incubation time: 3
  • software version: Sherlock 6.0B
  • library/peak naming table: TSBA 6
  • system: MIS MIDI
  • method/protocol: Sasser 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 25170
  • sample type: desert sand sample
  • geographic location: Tengger desert
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 38
  • longitude: 102
  • enrichment culture: R2A agar (Oxoid)
  • enrichment culture duration: 7 days
  • enrichment culture temperature: 25
  • isolation procedure: serially diluted with sterile water

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Desert
#Environmental#Terrestrial#Sandy

Sequence information

16S sequences

  • @ref: 25170
  • description: Altererythrobacter sp. MN-1 16S ribosomal RNA gene, partial sequence
  • accession: KT906300
  • length: 1449
  • database: nuccore
  • NCBI tax ID: 1739690

GC content

  • @ref: 25170
  • GC-content: 67
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 25170

culture collection no.: KCTC 52135, MCCC 1K02066

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25170Q. L. Zhao, H. R.,Han, Q. Q.,He, A. L.,Nie, C. Y.,Wang, S. M.,Zhang, J. L.Altererythrobacter soli sp. nov., isolated from desert sand10.1099/ijsem.0.001652IJSEM 67: 454-459 201727902308