Strain identifier
BacDive ID: 133345
Type strain:
Species: Alteromonas lipolytica
Strain Designation: JW12
NCBI tax ID(s): 1856405 (species)
General
@ref: 25171
BacDive-ID: 133345
keywords: genome sequence, 16S sequence, Bacteria, aerobe, chemoorganotroph, Gram-negative, motile, rod-shaped, colony-forming
description: Alteromonas lipolytica JW12 is an aerobe, chemoorganotroph, Gram-negative bacterium that forms circular colonies and was isolated from surface seawater.
NCBI tax id
- NCBI tax id: 1856405
- Matching level: species
doi: 10.13145/bacdive133345.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Alteromonas
- species: Alteromonas lipolytica
- full scientific name: Alteromonas lipolytica Shi et al. 2017
@ref: 25171
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Alteromonas
species: Alteromonas lipolytica
strain designation: JW12
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
25171 | negative | 1.5-2.2 µm | 0.7-1.2 µm | rod-shaped | yes | |
69480 | yes | 97.737 | ||||
69480 | negative | 99.999 |
colony morphology
- @ref: 25171
- colony size: 1.0-2.0 mm
- colony color: cream
- colony shape: circular
- incubation period: 1 day
- medium used: marine agar (MA)
Culture and growth conditions
culture medium
- @ref: 25171
- name: marine agar (MA)
- growth: yes
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
25171 | positive | growth | 15.0-43.0 | |
25171 | positive | optimum | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
25171 | positive | growth | 5.5-9.5 | alkaliphile |
25171 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 25171
- oxygen tolerance: aerobe
nutrition type
- @ref: 25171
- type: chemoorganotroph
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.952 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
25171 | NaCl | positive | growth | 0.5-10.0 %(w/v) |
25171 | NaCl | optimum | 3 %(w/v) |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
25171 | 16899 | D-mannitol | - | builds acid from |
25171 | 16024 | D-mannose | - | builds acid from |
25171 | 17924 | D-sorbitol | - | builds acid from |
25171 | 65327 | D-xylose | - | builds acid from |
25171 | 16236 | ethanol | - | builds acid from |
25171 | 5291 | gelatin | - | hydrolysis |
25171 | 17268 | myo-inositol | - | builds acid from |
25171 | 62345 | L-rhamnose | - | builds acid from |
25171 | 17266 | L-sorbose | - | builds acid from |
25171 | 15963 | ribitol | - | builds acid from |
25171 | 28017 | starch | - | hydrolysis |
25171 | 36219 | alpha-lactose | + | builds acid from |
25171 | 17057 | cellobiose | + | builds acid from |
25171 | 12936 | D-galactose | + | builds acid from |
25171 | 17634 | D-glucose | + | builds acid from |
25171 | 4853 | esculin | + | hydrolysis |
25171 | 17306 | maltose | + | builds acid from |
25171 | 6731 | melezitose | + | builds acid from |
25171 | 16634 | raffinose | + | builds acid from |
25171 | 33942 | ribose | + | builds acid from |
25171 | 17992 | sucrose | + | builds acid from |
25171 | 27082 | trehalose | + | builds acid from |
25171 | 53424 | tween 20 | + | hydrolysis |
25171 | 53423 | tween 40 | + | hydrolysis |
25171 | 53426 | tween 80 | + | hydrolysis |
metabolite production
- @ref: 25171
- Chebi-ID: 53388
- metabolite: polyhydroxybutyrate
- production: yes
enzymes
@ref | value | activity | ec |
---|---|---|---|
25171 | acid phosphatase | + | 3.1.3.2 |
25171 | alkaline phosphatase | + | 3.1.3.1 |
25171 | alpha-chymotrypsin | + | 3.4.21.1 |
25171 | alpha-galactosidase | + | 3.2.1.22 |
25171 | alpha-glucosidase | + | 3.2.1.20 |
25171 | alpha-mannosidase | - | 3.2.1.24 |
25171 | beta-glucosidase | + | 3.2.1.21 |
25171 | beta-glucuronidase | + | 3.2.1.31 |
25171 | catalase | - | 1.11.1.6 |
25171 | cystine arylamidase | + | 3.4.11.3 |
25171 | cytochrome oxidase | + | 1.9.3.1 |
25171 | esterase (C 4) | + | |
25171 | esterase Lipase (C 8) | + | |
25171 | leucine arylamidase | + | 3.4.11.1 |
25171 | lipase (C 14) | - | |
25171 | naphthol-AS-BI-phosphohydrolase | + | |
25171 | trypsin | + | 3.4.21.4 |
25171 | urease | - | 3.5.1.5 |
25171 | valine arylamidase | + |
fatty acid profile
fatty acids
@ref fatty acid percentage 25171 10-Methyl C17:0 0.5 25171 C10:0 3OH 0.4 25171 C12:0 3.6 25171 C12:0 3OH 2.6 25171 C12:1 3OH 2.8 25171 C13:1 at 12-13 0.4 25171 C14:0 3 25171 C14:0 3OH / C16:1 iso I 3.3 25171 C15:0 0.6 25171 C15:1ω8c 0.4 25171 C16:0 26.7 25171 C16:0 3OH 0.5 25171 C16:0 n alcohol 1 25171 C16:1ω7c / C15:0 iso 2OH 34 25171 C16:1ω7c alcohol 1.5 25171 C17:0 0.5 25171 C17:1ω8c 1 25171 C18:0 1.2 25171 C18:1ω7c 14.6 - type of FA analysis: whole cell analysis
- incubation medium: Marine Agar (MA)
- agar/liquid: agar
- incubation temperature: 30
- incubation time: 0
- system: MIS MIDI
Isolation, sampling and environmental information
isolation
- @ref: 25171
- sample type: surface seawater
- geographic location: Arabian Sea
- enrichment culture: natural seawater agar
- enrichment culture composition: pH 7.2–7.4; supplemented with 0.05 % peptone (w/v; BD Difco) and 0.01 % yeast extract (w/v; BD Difco)
- enrichment culture duration: 10 days
- enrichment culture temperature: 30
- isolation procedure: standard 10-fold dilution plating technique
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Surface water |
taxonmaps
- @ref: 69479
- File name: preview.99_7685.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_261;97_4387;98_5617;99_7685&stattab=map
- Last taxonomy: Alteromonas
- 16S sequence: KX146484
- Sequence Identity:
- Total samples: 670
- soil counts: 10
- aquatic counts: 590
- animal counts: 66
- plant counts: 4
Sequence information
16S sequences
- @ref: 25171
- description: Alteromonas sp. JW12 16S ribosomal RNA gene, partial sequence
- accession: KX146484
- length: 1455
- database: nuccore
- NCBI tax ID: 1856405
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Alteromonas lipolytica JW12 | GCA_001758465 | scaffold | ncbi | 1856405 |
66792 | Alteromonas lipolytica CGMCC 1.15735 | GCA_014643555 | contig | ncbi | 1856405 |
66792 | Alteromonas lipolytica strain CGMCC 1.15735 | 1856405.15 | wgs | patric | 1856405 |
66792 | Alteromonas lipolytica JW12 | 2834723206 | draft | img | 1856405 |
GC content
- @ref: 25171
- GC-content: 48.4
- method: genome sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | yes | 89.918 | no |
gram-positive | no | 99.199 | yes |
anaerobic | no | 97.901 | yes |
aerobic | yes | 74.809 | no |
halophile | yes | 51.916 | no |
spore-forming | no | 96.695 | no |
glucose-util | yes | 88.744 | no |
thermophile | no | 99.692 | no |
motile | yes | 92.649 | yes |
glucose-ferment | no | 82.31 | no |
External links
@ref: 25171
culture collection no.: CGMCC 1.15735, KCTC 52408, MCCC 1K03175
literature
- topic: Phylogeny
- Pubmed-ID: 27902291
- title: Alteromonas lipolytica sp. nov., a poly-beta-hydroxybutyrate-producing bacterium isolated from surface seawater.
- authors: Shi XL, Wu YH, Jin XB, Wang CS, Xu XW
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.001604
- year: 2017
- mesh: Alteromonas/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hydroxybutyrates/*metabolism, Indian Ocean, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Polyesters/*metabolism, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA
- topic2: Metabolism
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
25171 | X. L. W. Shi, Y. H.,Jin, X. B.,Wang, C. S.,Xu, X. W. | Alteromonas lipolytica sp. nov., a poly-beta-hydroxybutyrate-producing bacterium isolated from surface seawater | 10.1099/ijsem.0.001604 | IJSEM 67: 237-242 2017 | 27902291 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |