Strain identifier

BacDive ID: 133343

Type strain: Yes

Species: Marinobacter salinus

Strain Designation: Hb8

Strain history: S.-J. Park; Dept. of Biol., Jeju Natl. Univ., South Korea; Hb8.

NCBI tax ID(s): 1874317 (species)

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General

@ref: 25193

BacDive-ID: 133343

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Marinobacter salinus Hb8 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from tidal flat environment.

NCBI tax id

  • NCBI tax id: 1874317
  • Matching level: species

strain history

  • @ref: 67770
  • history: S.-J. Park; Dept. of Biol., Jeju Natl. Univ., South Korea; Hb8.

doi: 10.13145/bacdive133343.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter salinus
  • full scientific name: Marinobacter salinus Rani et al. 2017

@ref: 25193

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter salinus

strain designation: Hb8

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangementconfidence
25193negative1.5-2.8 µm0.5-0.7 µmrod-shapedyesmonotrichous, polar
69480yes96.352
69480negative99.998

colony morphology

  • @ref: 25193
  • colony color: non-pigmented (later creamy)
  • colony shape: circular
  • incubation period: 1.75 days
  • medium used: marine agar (MA)

Culture and growth conditions

culture medium

  • @ref: 25193
  • name: marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25193positivegrowth10.0-37.0
25193positiveoptimum37mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
25193positivegrowth5.0-9.0alkaliphile
25193positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 25193
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
25193no
69481no100
69480no99.998

halophily

@refsalttested relationconcentrationgrowthhalophily level
25193NaCloptimum5 %
25193NaClgrowth0 %no
25193NaClgrowth1.0-15.0 %(w/v)positivemoderately halophilic

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
251934853esculin-hydrolysis
2519328017starch-hydrolysis
2519327897tryptophan-energy source
2519322599arabinose+assimilation
2519316947citrate+assimilation
251935291gelatin+hydrolysis
2519317234glucose+assimilation
2519325115malate+assimilation
2519329864mannitol+assimilation
2519337684mannose+assimilation
25193506227N-acetylglucosamine+assimilation
2519317632nitrate+reduction
2519318401phenylacetate+assimilation
2519353423tween 40+hydrolysis

metabolite production

  • @ref: 25193
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 25193
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
25193acid phosphatase-3.1.3.2
25193alkaline phosphatase-3.1.3.1
25193alpha-fucosidase-3.2.1.51
25193alpha-galactosidase-3.2.1.22
25193alpha-glucosidase-3.2.1.20
25193alpha-mannosidase-3.2.1.24
25193beta-glucosidase-3.2.1.21
25193beta-glucuronidase-3.2.1.31
25193catalase+1.11.1.6
25193cystine arylamidase-3.4.11.3
25193cytochrome oxidase+1.9.3.1
25193esterase (C 4)+
25193lipase+
25193N-acetyl-beta-glucosaminidase-3.2.1.52
25193naphthol-AS-BI-phosphohydrolase-
25193trypsin-3.4.21.4
25193tryptophan deaminase-4.1.99.1
25193urease-3.5.1.5
25193valine arylamidase-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperatureisolation procedure
25193tidal flat environmentGunsanRepublic of KoreaKORAsia36126marine 2216 agar (MA) plates7 days25serially diluted with natural sea water and filtered (0.22 µm pore size)
67770Tidal flat sediment at GunsanRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Tidal flat

taxonmaps

  • @ref: 69479
  • File name: preview.99_6427.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_1317;97_1564;98_4746;99_6427&stattab=map
  • Last taxonomy: Marinobacter
  • 16S sequence: KX063622
  • Sequence Identity:
  • Total samples: 347
  • soil counts: 87
  • aquatic counts: 236
  • animal counts: 22
  • plant counts: 2

Sequence information

16S sequences

  • @ref: 25193
  • description: Marinobacter sp. Hb8 16S ribosomal RNA gene, partial sequence
  • accession: KX063622
  • length: 1460
  • database: nuccore
  • NCBI tax ID: 1874317

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Marinobacter salinus Hb8GCA_001854125completencbi1874317
66792Marinobacter salinus Hb82718217953completeimg1874317

GC content

@refGC-contentmethod
2519354.51sequence analysis
6777054.5thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes91.668yes
gram-positiveno98.855yes
anaerobicno96.258yes
aerobicyes65.551no
halophileyes92.3yes
spore-formingno96.318yes
thermophileno99.04yes
glucose-utilyes53.429yes
motileyes90.101yes
glucose-fermentno89.782no

External links

@ref: 25193

culture collection no.: KCTC 52255, JCM 31416

literature

  • topic: Phylogeny
  • Pubmed-ID: 27902222
  • title: Marinobacter salinus sp. nov., a moderately halophilic bacterium isolated from a tidal flat environment.
  • authors: Rani S, Koh HW, Kim H, Rhee SK, Park SJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001587
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Marinobacter/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25193S. K. Rani, H. W.,Kim, H.,Rhee, S. K.,Park, S. J.Marinobacter salinus sp. nov., a moderately halophilic bacterium isolated from a tidal flat environment10.1099/ijsem.0.001587IJSEM 67: 205-211 201727902222
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1