Strain identifier

BacDive ID: 133335

Type strain: Yes

Species: Aquimarina versatilis

Strain Designation: CBA3207

Strain history: S.-J. Lee CBA3207 <-- S. W. Roh.

NCBI tax ID(s): 1417658 (species)

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General

@ref: 25172

BacDive-ID: 133335

keywords: 16S sequence, Bacteria, aerobe, chemoorganotroph, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Aquimarina versatilis CBA3207 is an aerobe, chemoorganotroph, mesophilic bacterium that forms circular colonies and was isolated from seashore sand.

NCBI tax id

  • NCBI tax id: 1417658
  • Matching level: species

strain history

  • @ref: 67770
  • history: S.-J. Lee CBA3207 <-- S. W. Roh.

doi: 10.13145/bacdive133335.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Aquimarina
  • species: Aquimarina versatilis
  • full scientific name: Aquimarina versatilis Lee et al. 2017

@ref: 25172

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Aquimarina

species: Aquimarina versatilis

strain designation: CBA3207

type strain: yes

Morphology

cell morphology

  • @ref: 25172
  • gram stain: negative
  • cell length: 1.0-2.0 µm
  • cell width: 0.2-0.4 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 25172
  • colony size: 0.5-2.0 mm
  • colony color: orange
  • colony shape: circular
  • incubation period: 3 days
  • medium used: marine agar (MA)

pigmentation

  • @ref: 25172
  • production: no
  • name: Flexirubin

Culture and growth conditions

culture medium

  • @ref: 25172
  • name: marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25172positiveoptimum25.0-30.0mesophilic
25172positivegrowth10.0-40.0
67770positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
25172positiveoptimum7.0-7.5
25172positivegrowth6.5-10.5alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 25172
  • oxygen tolerance: aerobe

nutrition type

  • @ref: 25172
  • type: chemoorganotroph

spore formation

  • @ref: 25172
  • spore formation: no

halophily

@refsalttested relationconcentrationgrowth
25172NaCloptimum3.0-4.0 %(w/v)
25172NaClgrowth1.0-4.0 %(w/v)positive

observation

  • @ref: 67770
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2517218305arbutin-builds acid from
2517215963ribitol-builds acid from
2517217108D-arabinose-builds acid from
2517218333D-arabitol-builds acid from
2517215824D-fructose-builds acid from
2517228847D-fucose-builds acid from
2517217716lactose-builds acid from
2517262318D-lyxose-builds acid from
2517216899D-mannitol-builds acid from
251726731melezitose-builds acid from
2517228053melibiose-builds acid from
2517216634raffinose-builds acid from
2517216988D-ribose-builds acid from
2517217924D-sorbitol-builds acid from
2517216443D-tagatose-builds acid from
2517232528turanose-builds acid from
2517265327D-xylose-builds acid from
2517217113erythritol-builds acid from
2517216813galactitol-builds acid from
2517228066gentiobiose-builds acid from
2517224265gluconate-builds acid from
2517217234glucose-fermentation
2517217754glycerol-builds acid from
2517217268myo-inositol-builds acid from
2517215443inulin-builds acid from
2517230849L-arabinose-builds acid from
2517218403L-arabitol-builds acid from
2517218287L-fucose-builds acid from
2517217266L-sorbose-builds acid from
2517217895L-tyrosine-hydrolysis
2517265328L-xylose-builds acid from
25172320061methyl alpha-D-glucopyranoside-builds acid from
2517243943methyl alpha-D-mannoside-builds acid from
2517274863methyl beta-D-xylopyranoside-builds acid from
2517217632nitrate-reduction
2517217814salicin-builds acid from
2517227897tryptophan-energy source
2517217151xylitol-builds acid from
25172168082-dehydro-D-gluconate+builds acid from
25172581435-dehydro-D-gluconate+builds acid from
2517227613amygdalin+builds acid from
2517217057cellobiose+builds acid from
2517212936D-galactose+builds acid from
2517217634D-glucose+builds acid from
2517217306maltose+builds acid from
2517216024D-mannose+builds acid from
2517217992sucrose+builds acid from
2517216551D-trehalose+builds acid from
251724853esculin+builds acid from
251725291gelatin+hydrolysis
2517228087glycogen+builds acid from
2517262345L-rhamnose+builds acid from
25172506227N-acetylglucosamine+builds acid from
2517228017starch+hydrolysis
2517228017starch+builds acid from
2517253424tween 20+hydrolysis
2517253423tween 40+hydrolysis
2517253426tween 80+hydrolysis

metabolite production

  • @ref: 25172
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 25172
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
25172acid phosphatase+3.1.3.2
25172alkaline phosphatase+3.1.3.1
25172alpha-fucosidase-3.2.1.51
25172alpha-galactosidase-3.2.1.22
25172alpha-glucosidase-3.2.1.20
25172alpha-mannosidase-3.2.1.24
25172arginine dihydrolase-3.5.3.6
25172beta-galactosidase-3.2.1.23
25172beta-glucosidase+3.2.1.21
25172beta-glucuronidase-3.2.1.31
25172catalase+1.11.1.6
25172cystine arylamidase-3.4.11.3
25172cytochrome oxidase-1.9.3.1
25172esterase (C 4)-
25172esterase Lipase (C 8)-
25172leucine arylamidase+3.4.11.1
25172lipase (C 14)-
25172N-acetyl-beta-glucosaminidase-3.2.1.52
25172naphthol-AS-BI-phosphohydrolase+
25172trypsin-3.4.21.4
25172tryptophan deaminase-4.1.99.1
25172urease-3.5.1.5
25172valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    2517210-Methyl C16:0 / iso-C17:1ω9c10.9
    25172C15:1ω6c2.3
    25172C16:1ω7c / C16:1ω6c6.6
    25172C17:1ω8c1.3
    25172C15:0 iso25.9
    25172C15:0 iso 3OH4
    25172C15:1 iso G12.4
    25172C16:0 iso2.3
    25172C16:0 iso 3OH2.8
    25172C17:0 iso 3OH24.5
  • type of FA analysis: whole cell analysis
  • incubation medium: Marine Agar (MA)
  • agar/liquid: agar
  • incubation temperature: 25
  • incubation time: 3
  • software version: Sherlock 6.2
  • library/peak naming table: TSBA 6
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperature
25172seashore sandJeju islandRepublic of KoreaKORAsia33126marine agar 2216 (MA; BD)14 days25
67770Seashore sand of Jeju islandRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Sandy
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Coast

taxonmaps

  • @ref: 69479
  • File name: preview.99_50424.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_10139;97_28448;98_36244;99_50424&stattab=map
  • Last taxonomy: Aquimarina versatilis subclade
  • 16S sequence: KF612582
  • Sequence Identity:
  • Total samples: 106
  • soil counts: 10
  • aquatic counts: 75
  • animal counts: 20
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 25172
  • description: Aquimarina sp. CBA3207 16S ribosomal RNA gene, partial sequence
  • accession: KF612582
  • length: 1351
  • database: nuccore
  • NCBI tax ID: 1417658

GC content

  • @ref: 25172
  • GC-content: 38.8
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 25172

culture collection no.: KACC 17666, JCM 19528

literature

  • topic: Phylogeny
  • Pubmed-ID: 27902250
  • title: Aquimarina versatilis sp. nov., isolated from seashore sand, and emended description of the genus Aquimarina.
  • authors: Lee JK, Cha IT, Kim M, Choi BG, Song HS, Kim JY, Roh SW, Lee SJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001645
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Islands, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Silicon Dioxide, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25172J. K. C. Lee, I. T.,Kim, M.,Choi, B. G.,Song, H. S.,Kim, J. Y.,Roh, S. W.,Lee, S. J.Aquimarina versatilis sp. nov., isolated from seashore sand, and emended description of the genus Aquimarina10.1099/ijsem.0.001645IJSEM 67: 411-416 201727902250
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/