Strain identifier
BacDive ID: 133333
Type strain:
Species: Hyunsoonleella rubra
Strain Designation: FA042
Strain history: <- Zongjun Du, Shandong Univ.
NCBI tax ID(s): 1737062 (species)
General
@ref: 25186
BacDive-ID: 133333
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming
description: Hyunsoonleella rubra FA042 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from marine sediment sample.
NCBI tax id
- NCBI tax id: 1737062
- Matching level: species
strain history
- @ref: 67771
- history: <- Zongjun Du, Shandong Univ.
doi: 10.13145/bacdive133333.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Hyunsoonleella
- species: Hyunsoonleella rubra
- full scientific name: Hyunsoonleella rubra Shi et al. 2017
@ref: 25186
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Hyunsoonleella
species: Hyunsoonleella rubra
strain designation: FA042
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility |
---|---|---|---|---|---|
25186 | negative | 1.6-3.8 µm | 0.3-0.4 mm | rod-shaped | no |
67771 | rod-shaped | no | |||
67771 | negative |
colony morphology
- @ref: 25186
- colony size: 0.5-1.0 mm
- colony color: red
- colony shape: circular
- incubation period: 3 days
- medium used: 2216E agar
pigmentation
@ref | production | name |
---|---|---|
25186 | yes | Flexirubin-type |
25186 | yes | Carotenoid |
Culture and growth conditions
culture medium
@ref | name | growth |
---|---|---|
25186 | LB (Luria-Bertani) MEDIUM | yes |
25186 | 2216E agar | yes |
25186 | nutrient agar (NA) | yes |
25186 | Reasoner's 2A agar (R2A) | no |
25186 | tryptic soy agar (TSA) | no |
25186 | TCBS | no |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
25186 | positive | optimum | 33 | mesophilic |
25186 | positive | growth | 15.0-37.0 | |
67771 | positive | growth | 30-37 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
25186 | positive | optimum | 7.0-7.5 | |
25186 | positive | growth | 6.0-8.5 | alkaliphile |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
25186 | aerobe |
67771 | aerobe |
halophily
@ref | salt | tested relation | concentration | growth |
---|---|---|---|---|
25186 | NaCl | optimum | 2.0-3.0 %(w/v) | |
25186 | NaCl | growth | 1.0-8.0 %(w/v) | positive |
observation
- @ref: 67771
- observation: quinones: MK-6
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
25186 | 16808 | 2-dehydro-D-gluconate | - | builds acid from |
25186 | 2509 | agar | - | hydrolysis |
25186 | 58187 | alginate | - | hydrolysis |
25186 | 36219 | alpha-lactose | - | builds acid from |
25186 | 27613 | amygdalin | - | builds acid from |
25186 | 18305 | arbutin | - | builds acid from |
25186 | 85146 | carboxymethylcellulose | - | hydrolysis |
25186 | 17057 | cellobiose | - | builds acid from |
25186 | 15963 | ribitol | - | builds acid from |
25186 | 17108 | D-arabinose | - | builds acid from |
25186 | 18333 | D-arabitol | - | builds acid from |
25186 | 15824 | D-fructose | - | builds acid from |
25186 | 28847 | D-fucose | - | builds acid from |
25186 | 12936 | D-galactose | - | builds acid from |
25186 | 17634 | D-glucose | - | builds acid from |
25186 | 62318 | D-lyxose | - | builds acid from |
25186 | 16899 | D-mannitol | - | builds acid from |
25186 | 16024 | D-mannose | - | builds acid from |
25186 | 17924 | D-sorbitol | - | builds acid from |
25186 | 65327 | D-xylose | - | builds acid from |
25186 | 17113 | erythritol | - | builds acid from |
25186 | 16813 | galactitol | - | builds acid from |
25186 | 5291 | gelatin | - | hydrolysis |
25186 | 28066 | gentiobiose | - | builds acid from |
25186 | 17754 | glycerol | - | builds acid from |
25186 | 17268 | myo-inositol | - | builds acid from |
25186 | 15443 | inulin | - | builds acid from |
25186 | 30849 | L-arabinose | - | builds acid from |
25186 | 18403 | L-arabitol | - | builds acid from |
25186 | 18287 | L-fucose | - | builds acid from |
25186 | 62345 | L-rhamnose | - | builds acid from |
25186 | 17266 | L-sorbose | - | builds acid from |
25186 | 65328 | L-xylose | - | builds acid from |
25186 | 17306 | maltose | - | builds acid from |
25186 | 6731 | melezitose | - | builds acid from |
25186 | 28053 | melibiose | - | builds acid from |
25186 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
25186 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
25186 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
25186 | 506227 | N-acetylglucosamine | - | builds acid from |
25186 | 17632 | nitrate | - | reduction |
25186 | 32032 | potassium gluconate | - | builds acid from |
25186 | 16634 | raffinose | - | builds acid from |
25186 | 17814 | salicin | - | builds acid from |
25186 | 28017 | starch | - | hydrolysis |
25186 | 28017 | starch | - | builds acid from |
25186 | 17992 | sucrose | - | builds acid from |
25186 | 27082 | trehalose | - | builds acid from |
25186 | 27897 | tryptophan | - | energy source |
25186 | 32528 | turanose | - | builds acid from |
25186 | 53426 | tween 80 | - | hydrolysis |
25186 | 17151 | xylitol | - | builds acid from |
25186 | 58143 | 5-dehydro-D-gluconate | + | builds acid from |
25186 | 30089 | acetate | + | oxidation |
25186 | 17925 | alpha-D-glucose | + | oxidation |
25186 | 36219 | alpha-lactose | + | oxidation |
25186 | 28938 | ammonium | + | nitrogen source |
25186 | 17057 | cellobiose | + | oxidation |
25186 | 16947 | citrate | + | carbon source |
25186 | 78697 | D-fructose 6-phosphate | + | oxidation |
25186 | 12936 | D-galactose | + | oxidation |
25186 | 16988 | D-ribose | + | builds acid from |
25186 | 16443 | D-tagatose | + | builds acid from |
25186 | 4853 | esculin | + | builds acid from |
25186 | 28087 | glycogen | + | builds acid from |
25186 | 29991 | L-aspartate | + | oxidation |
25186 | 29985 | L-glutamate | + | oxidation |
25186 | 62345 | L-rhamnose | + | oxidation |
25186 | 17309 | pectin | + | oxidation |
25186 | 17272 | propionate | + | oxidation |
25186 | 53424 | tween 20 | + | hydrolysis |
25186 | 53423 | tween 40 | + | hydrolysis |
25186 | 53425 | tween 60 | + | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
25186 | 15688 | acetoin | no |
25186 | 16136 | hydrogen sulfide | no |
25186 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test | citrate test |
---|---|---|---|---|---|
25186 | 15688 | acetoin | - | ||
25186 | 35581 | indole | - | ||
25186 | 16947 | citrate | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
25186 | acid phosphatase | + | 3.1.3.2 |
25186 | alkaline phosphatase | + | 3.1.3.1 |
25186 | alpha-chymotrypsin | - | 3.4.21.1 |
25186 | alpha-fucosidase | - | 3.2.1.51 |
25186 | alpha-glucosidase | + | 3.2.1.20 |
25186 | alpha-mannosidase | - | 3.2.1.24 |
25186 | beta-galactosidase | - | 3.2.1.23 |
25186 | beta-glucosidase | - | 3.2.1.21 |
25186 | beta-glucuronidase | - | 3.2.1.31 |
25186 | catalase | - | 1.11.1.6 |
25186 | cystine arylamidase | - | 3.4.11.3 |
25186 | cytochrome oxidase | - | 1.9.3.1 |
25186 | esterase (C 4) | + | |
25186 | esterase Lipase (C 8) | + | |
25186 | leucine arylamidase | + | 3.4.11.1 |
25186 | lipase (C 14) | - | |
25186 | lysine decarboxylase | - | 4.1.1.18 |
25186 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
25186 | naphthol-AS-BI-phosphohydrolase | + | |
25186 | ornithine decarboxylase | - | 4.1.1.17 |
25186 | trypsin | + | 3.4.21.4 |
25186 | tryptophan deaminase | - | 4.1.99.1 |
25186 | urease | - | 3.5.1.5 |
25186 | valine arylamidase | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude | enrichment culture | enrichment culture duration | enrichment culture temperature | isolation procedure |
---|---|---|---|---|---|---|---|---|---|---|---|
25186 | marine sediment sample | coast of Weihai | China | CHN | Asia | 37 | 122 | 2216E agar (Hopebio) | 7 days | 25 | serially diluted to 10-5 with sterilized seawater |
67771 | From marine sediment | the coastal area of Weihai | China | CHN | Asia | 37.5339 | 122.062 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Sediment |
Sequence information
16S sequences
- @ref: 25186
- description: Hyunsoonleella sp. FA042 16S ribosomal RNA gene, partial sequence
- accession: KR528480
- length: 1446
- database: nuccore
- NCBI tax ID: 1737062
GC content
@ref | GC-content | method |
---|---|---|
25186 | 38.5 | high performance liquid chromatography (HPLC) |
67771 | 38.5 |
External links
@ref: 25186
culture collection no.: KCTC 42398, MCCC 1H00110
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 27902307 | Hyunsoonleella rubra sp. nov., isolated from coastal sediment. | Shi MJ, Xie ZH, Zhang H, Du ZJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001638 | 2017 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 34928203 | Nocardioides donggukensis sp. nov. and Hyunsoonleella aquatilis sp. nov., isolated from Jeongbang Waterfall on Jeju Island. | Kim I, Chhetri G, Kim J, Kang M, So Y, Lee B, Jang W, Seo T | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005176 | 2021 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/microbiology, *Nocardioides/classification/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Water Microbiology | Transcriptome |
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
25186 | M. J. X. Shi, Z. H.,Zhang, H.,Du, Z. J. | Hyunsoonleella rubra sp. nov., isolated from coastal sediment | 10.1099/ijsem.0.001638 | IJSEM 67: 386-390 2017 | 27902307 |
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc |