Strain identifier

BacDive ID: 133333

Type strain: Yes

Species: Hyunsoonleella rubra

Strain Designation: FA042

Strain history: <- Zongjun Du, Shandong Univ.

NCBI tax ID(s): 1737062 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 25186

BacDive-ID: 133333

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Hyunsoonleella rubra FA042 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from marine sediment sample.

NCBI tax id

  • NCBI tax id: 1737062
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Zongjun Du, Shandong Univ.

doi: 10.13145/bacdive133333.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Hyunsoonleella
  • species: Hyunsoonleella rubra
  • full scientific name: Hyunsoonleella rubra Shi et al. 2017

@ref: 25186

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Hyunsoonleella

species: Hyunsoonleella rubra

strain designation: FA042

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
25186negative1.6-3.8 µm0.3-0.4 mmrod-shapedno
67771rod-shapedno
67771negative

colony morphology

  • @ref: 25186
  • colony size: 0.5-1.0 mm
  • colony color: red
  • colony shape: circular
  • incubation period: 3 days
  • medium used: 2216E agar

pigmentation

@refproductionname
25186yesFlexirubin-type
25186yesCarotenoid

Culture and growth conditions

culture medium

@refnamegrowth
25186LB (Luria-Bertani) MEDIUMyes
251862216E agaryes
25186nutrient agar (NA)yes
25186Reasoner's 2A agar (R2A)no
25186tryptic soy agar (TSA)no
25186TCBSno

culture temp

@refgrowthtypetemperaturerange
25186positiveoptimum33mesophilic
25186positivegrowth15.0-37.0
67771positivegrowth30-37mesophilic

culture pH

@refabilitytypepHPH range
25186positiveoptimum7.0-7.5
25186positivegrowth6.0-8.5alkaliphile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
25186aerobe
67771aerobe

halophily

@refsalttested relationconcentrationgrowth
25186NaCloptimum2.0-3.0 %(w/v)
25186NaClgrowth1.0-8.0 %(w/v)positive

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
25186168082-dehydro-D-gluconate-builds acid from
251862509agar-hydrolysis
2518658187alginate-hydrolysis
2518636219alpha-lactose-builds acid from
2518627613amygdalin-builds acid from
2518618305arbutin-builds acid from
2518685146carboxymethylcellulose-hydrolysis
2518617057cellobiose-builds acid from
2518615963ribitol-builds acid from
2518617108D-arabinose-builds acid from
2518618333D-arabitol-builds acid from
2518615824D-fructose-builds acid from
2518628847D-fucose-builds acid from
2518612936D-galactose-builds acid from
2518617634D-glucose-builds acid from
2518662318D-lyxose-builds acid from
2518616899D-mannitol-builds acid from
2518616024D-mannose-builds acid from
2518617924D-sorbitol-builds acid from
2518665327D-xylose-builds acid from
2518617113erythritol-builds acid from
2518616813galactitol-builds acid from
251865291gelatin-hydrolysis
2518628066gentiobiose-builds acid from
2518617754glycerol-builds acid from
2518617268myo-inositol-builds acid from
2518615443inulin-builds acid from
2518630849L-arabinose-builds acid from
2518618403L-arabitol-builds acid from
2518618287L-fucose-builds acid from
2518662345L-rhamnose-builds acid from
2518617266L-sorbose-builds acid from
2518665328L-xylose-builds acid from
2518617306maltose-builds acid from
251866731melezitose-builds acid from
2518628053melibiose-builds acid from
25186320061methyl alpha-D-glucopyranoside-builds acid from
2518643943methyl alpha-D-mannoside-builds acid from
2518674863methyl beta-D-xylopyranoside-builds acid from
25186506227N-acetylglucosamine-builds acid from
2518617632nitrate-reduction
2518632032potassium gluconate-builds acid from
2518616634raffinose-builds acid from
2518617814salicin-builds acid from
2518628017starch-hydrolysis
2518628017starch-builds acid from
2518617992sucrose-builds acid from
2518627082trehalose-builds acid from
2518627897tryptophan-energy source
2518632528turanose-builds acid from
2518653426tween 80-hydrolysis
2518617151xylitol-builds acid from
25186581435-dehydro-D-gluconate+builds acid from
2518630089acetate+oxidation
2518617925alpha-D-glucose+oxidation
2518636219alpha-lactose+oxidation
2518628938ammonium+nitrogen source
2518617057cellobiose+oxidation
2518616947citrate+carbon source
2518678697D-fructose 6-phosphate+oxidation
2518612936D-galactose+oxidation
2518616988D-ribose+builds acid from
2518616443D-tagatose+builds acid from
251864853esculin+builds acid from
2518628087glycogen+builds acid from
2518629991L-aspartate+oxidation
2518629985L-glutamate+oxidation
2518662345L-rhamnose+oxidation
2518617309pectin+oxidation
2518617272propionate+oxidation
2518653424tween 20+hydrolysis
2518653423tween 40+hydrolysis
2518653425tween 60+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
2518615688acetoinno
2518616136hydrogen sulfideno
2518635581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testcitrate test
2518615688acetoin-
2518635581indole-
2518616947citrate+

enzymes

@refvalueactivityec
25186acid phosphatase+3.1.3.2
25186alkaline phosphatase+3.1.3.1
25186alpha-chymotrypsin-3.4.21.1
25186alpha-fucosidase-3.2.1.51
25186alpha-glucosidase+3.2.1.20
25186alpha-mannosidase-3.2.1.24
25186beta-galactosidase-3.2.1.23
25186beta-glucosidase-3.2.1.21
25186beta-glucuronidase-3.2.1.31
25186catalase-1.11.1.6
25186cystine arylamidase-3.4.11.3
25186cytochrome oxidase-1.9.3.1
25186esterase (C 4)+
25186esterase Lipase (C 8)+
25186leucine arylamidase+3.4.11.1
25186lipase (C 14)-
25186lysine decarboxylase-4.1.1.18
25186N-acetyl-beta-glucosaminidase-3.2.1.52
25186naphthol-AS-BI-phosphohydrolase+
25186ornithine decarboxylase-4.1.1.17
25186trypsin+3.4.21.4
25186tryptophan deaminase-4.1.99.1
25186urease-3.5.1.5
25186valine arylamidase+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperatureisolation procedure
25186marine sediment samplecoast of WeihaiChinaCHNAsia371222216E agar (Hopebio)7 days25serially diluted to 10-5 with sterilized seawater
67771From marine sedimentthe coastal area of WeihaiChinaCHNAsia37.5339122.062

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

Sequence information

16S sequences

  • @ref: 25186
  • description: Hyunsoonleella sp. FA042 16S ribosomal RNA gene, partial sequence
  • accession: KR528480
  • length: 1446
  • database: nuccore
  • NCBI tax ID: 1737062

GC content

@refGC-contentmethod
2518638.5high performance liquid chromatography (HPLC)
6777138.5

External links

@ref: 25186

culture collection no.: KCTC 42398, MCCC 1H00110

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27902307Hyunsoonleella rubra sp. nov., isolated from coastal sediment.Shi MJ, Xie ZH, Zhang H, Du ZJInt J Syst Evol Microbiol10.1099/ijsem.0.0016382017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny34928203Nocardioides donggukensis sp. nov. and Hyunsoonleella aquatilis sp. nov., isolated from Jeongbang Waterfall on Jeju Island.Kim I, Chhetri G, Kim J, Kang M, So Y, Lee B, Jang W, Seo TInt J Syst Evol Microbiol10.1099/ijsem.0.0051762021Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/microbiology, *Nocardioides/classification/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Water MicrobiologyTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25186M. J. X. Shi, Z. H.,Zhang, H.,Du, Z. J.Hyunsoonleella rubra sp. nov., isolated from coastal sediment10.1099/ijsem.0.001638IJSEM 67: 386-390 201727902307
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc