Strain identifier

BacDive ID: 133332

Type strain: Yes

Species: Flavobacterium luticocti

Strain Designation: xz20

Strain history: H. Liu; Anhui Normal Univ., China; xz20.

NCBI tax ID(s): 1852971 (species)

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General

@ref: 25182

BacDive-ID: 133332

keywords: 16S sequence, Bacteria, Gram-negative, rod-shaped, colony-forming

description: Flavobacterium luticocti xz20 is a Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from municipal wastewater treatment plant.

NCBI tax id

  • NCBI tax id: 1852971
  • Matching level: species

strain history

  • @ref: 67770
  • history: H. Liu; Anhui Normal Univ., China; xz20.

doi: 10.13145/bacdive133332.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium luticocti
  • full scientific name: Flavobacterium luticocti Liu et al. 2017

@ref: 25182

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium luticocti

strain designation: xz20

type strain: yes

Morphology

cell morphology

  • @ref: 25182
  • gram stain: negative
  • cell length: 1.3-1.7 µm
  • cell width: 0.4-0.6 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 25182
  • colony color: pale yellow
  • colony shape: circular
  • medium used: LB agar

pigmentation

  • @ref: 25182
  • production: no
  • name: Flexirubin-type

Culture and growth conditions

culture medium

@refnamegrowth
25182tryptic soy agar (TSA)yes
25182LB (Luria-Bertani) MEDIUMyes

culture temp

@refgrowthtypetemperaturerange
25182positivegrowth15.0-40.0
25182positiveoptimum25.0-37.0mesophilic
25182nogrowth10psychrophilic
25182nogrowth42thermophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
25182positivegrowth6.0-8.5alkaliphile
25182positiveoptimum7

Physiology and metabolism

spore formation

  • @ref: 25182
  • spore formation: no

halophily

@refsalttested relationconcentrationgrowth
25182NaCloptimum1.0-2.0 %
25182NaClgrowth4 %no
25182NaClgrowth0.0-3.0 %(w/v)positive

observation

  • @ref: 67770
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
25182168082-dehydro-D-gluconate-builds acid from
25182581435-dehydro-D-gluconate-builds acid from
2518217128adipate-assimilation
2518227613amygdalin-builds acid from
2518218305arbutin-builds acid from
2518215963ribitol-builds acid from
2518217108D-arabinose-builds acid from
2518218333D-arabitol-builds acid from
2518217057cellobiose-builds acid from
2518215824D-fructose-builds acid from
2518228847D-fucose-builds acid from
2518212936D-galactose-builds acid from
2518217634D-glucose-fermentation
2518217634D-glucose-assimilation
2518217634D-glucose-builds acid from
2518217716lactose-builds acid from
2518262318D-lyxose-builds acid from
2518217306maltose-builds acid from
2518216899D-mannitol-assimilation
2518216899D-mannitol-builds acid from
2518216024D-mannose-assimilation
2518216024D-mannose-builds acid from
251826731melezitose-builds acid from
2518228053melibiose-builds acid from
2518216634raffinose-builds acid from
2518216988D-ribose-builds acid from
2518217992sucrose-builds acid from
2518217924D-sorbitol-builds acid from
2518216443D-tagatose-builds acid from
2518216551D-trehalose-builds acid from
2518232528turanose-builds acid from
2518265327D-xylose-builds acid from
2518227689decanoate-assimilation
2518217113erythritol-builds acid from
251824853esculin-builds acid from
2518216813galactitol-builds acid from
2518228066gentiobiose-builds acid from
2518224265gluconate-builds acid from
2518217754glycerol-builds acid from
2518228087glycogen-builds acid from
2518217268myo-inositol-builds acid from
2518215443inulin-builds acid from
2518230849L-arabinose-assimilation
2518230849L-arabinose-builds acid from
2518218403L-arabitol-builds acid from
2518218287L-fucose-builds acid from
2518262345L-rhamnose-builds acid from
2518217266L-sorbose-builds acid from
2518265328L-xylose-builds acid from
2518225115malate-assimilation
2518217306maltose-assimilation
25182320061methyl alpha-D-glucopyranoside-builds acid from
2518243943methyl alpha-D-mannoside-builds acid from
2518274863methyl beta-D-xylopyranoside-builds acid from
25182506227N-acetylglucosamine-assimilation
25182506227N-acetylglucosamine-builds acid from
2518217632nitrate-reduction
2518218401phenylacetate-assimilation
2518232032potassium gluconate-assimilation
2518217814salicin-builds acid from
2518253258sodium citrate-assimilation
2518228017starch-builds acid from
2518227897tryptophan-energy source
2518217151xylitol-builds acid from
251824853esculin+hydrolysis
251825291gelatin+hydrolysis

metabolite production

  • @ref: 25182
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 25182
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
25182acid phosphatase+3.1.3.2
25182alkaline phosphatase+3.1.3.1
25182alpha-chymotrypsin+3.4.21.1
25182alpha-fucosidase-3.2.1.51
25182alpha-galactosidase-3.2.1.22
25182alpha-glucosidase-3.2.1.20
25182alpha-mannosidase-3.2.1.24
25182arginine dihydrolase+3.5.3.6
25182beta-galactosidase-3.2.1.23
25182beta-glucosidase-3.2.1.21
25182beta-glucuronidase-3.2.1.31
25182catalase+1.11.1.6
25182cystine arylamidase+3.4.11.3
25182cytochrome oxidase+1.9.3.1
25182esterase (C 4)+
25182esterase Lipase (C 8)+
25182leucine arylamidase+3.4.11.1
25182lipase (C 14)+
25182N-acetyl-beta-glucosaminidase-3.2.1.52
25182naphthol-AS-BI-phosphohydrolase+
25182trypsin+3.4.21.4
25182tryptophan deaminase-4.1.99.1
25182urease-3.5.1.5
25182valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25182C15:0 anteiso3.6
    25182C16:00.8
    25182C16:1ω7c / C16:1ω6c0.7
    25182C13:0 iso1.7
    25182C14:0 iso0.7
    25182C15:0 iso46.6
    25182C15:0 iso 3OH4.6
    25182C15:1 iso G20.5
    25182C16:0 iso2
    25182C16:0 iso 3OH2.7
    25182C16:1 iso G0.6
    25182C17:0 iso 3OH3.5
    25182C17:1 iso ω9c / C16:0 10-methyl8.2
  • type of FA analysis: whole cell analysis
  • incubation medium: Tryptic soy agar (TSA)
  • agar/liquid: agar
  • incubation temperature: 30
  • incubation time: 2
  • system: MIS MIDI
  • method/protocol: Sasser 1990

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
25182municipal wastewater treatment plantXuzhou, JiangsuChinaCHNAsia
67770Wastewater of a municipal wastewater treatment plant in XuzhouChinaCHNAsia

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Waste
  • Cat3: #Water treatment plant

taxonmaps

  • @ref: 69479
  • File name: preview.99_157276.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_66;96_59309;97_76784;98_103633;99_157276&stattab=map
  • Last taxonomy: Flavobacterium luticocti subclade
  • 16S sequence: KU746271
  • Sequence Identity:
  • Total samples: 5347
  • soil counts: 314
  • aquatic counts: 4208
  • animal counts: 763
  • plant counts: 62

Sequence information

16S sequences

  • @ref: 25182
  • description: Flavobacterium sp. xz20 16S ribosomal RNA gene, partial sequence
  • accession: KU746271
  • length: 1479
  • database: nuccore
  • NCBI tax ID: 1852971

GC content

  • @ref: 25182
  • GC-content: 32.9
  • method: genome sequence analysis

External links

@ref: 25182

culture collection no.: CCTCC AB 2015421, JCM 31174

literature

  • topic: Phylogeny
  • Pubmed-ID: 27902260
  • title: Flavobacterium luticocti sp. nov., isolated from wastewater.
  • authors: Liu H, Lu P, Jin L, Zhu G
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001634
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, Waste Water/*microbiology
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25182H. L. Liu, P.,Jin, L.,Zhu, G.Flavobacterium luticocti sp. nov., isolated from wastewater10.1099/ijsem.0.001634IJSEM 67: 369-373 201727902260
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/