Strain identifier

BacDive ID: 133309

Type strain: Yes

Species: Flavobacterium eburneum

Strain Designation: SA31

Strain history: T.-Y. Ahn; Dept. of Microbiol., Coll. of Nat. Sci., Dankook Univ., South Korea; SA31.

NCBI tax ID(s): 1842667 (species)

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General

@ref: 25146

BacDive-ID: 133309

keywords: 16S sequence, Bacteria, aerobe, colony-forming

description: Flavobacterium eburneum SA31 is an aerobe bacterium that forms circular colonies and was isolated from reclaimed saline land soil at Bunam Lake in Taean-gun.

NCBI tax id

  • NCBI tax id: 1842667
  • Matching level: species

strain history

  • @ref: 67770
  • history: T.-Y. Ahn; Dept. of Microbiol., Coll. of Nat. Sci., Dankook Univ., South Korea; SA31.

doi: 10.13145/bacdive133309.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium eburneum
  • full scientific name: Flavobacterium eburneum Hwang et al. 2017

@ref: 25146

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium eburneum

strain designation: SA31

type strain: yes

Morphology

colony morphology

  • @ref: 25146
  • colony color: ivory in colour
  • colony shape: circular
  • incubation period: 2 days
  • medium used: R2A

pigmentation

@refproductionname
25146noFlexirubin-type
25146noCarotenoid pigments

Culture and growth conditions

culture medium

@refnamegrowthcomposition
25146Reasoner's 2A agar (R2A)yeswith 1 % (w/v) sodium chloride
25146TSA (Trypticase soy agar)yes
25146MacConkey agarno
25146NA (Nutrient Agar)yes
25146Anacker and Ordal’s agaryes

culture temp

@refgrowthtypetemperaturerange
25146positivegrowth10-35
25146positiveoptimum25-30mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
25146positivegrowth6.0-9.0alkaliphile
25146positiveoptimum7.0-7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 25146
  • oxygen tolerance: aerobe

halophily

@refsalttested relationconcentrationgrowth
25146NaCloptimum0 %
25146NaClgrowth0-2.0 %(w/v)positive

observation

  • @ref: 67770
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
25146581435-dehydro-D-gluconate-assimilation
2514615963ribitol-assimilation
2514617057cellobiose-assimilation
2514623399coumarate-assimilation
2514616899D-mannitol-assimilation
2514617924D-sorbitol-assimilation
2514616443D-tagatose-assimilation
2514616991dna-hydrolysis
251464853esculin-hydrolysis
2514628757fructose-builds acid from
251465291gelatin-hydrolysis
2514617234glucose-builds acid from
2514617234glucose-fermentation
2514618403L-arabitol-assimilation
2514615589L-malate-assimilation
2514624996lactate-builds base from
2514624996lactate-assimilation
2514625115malate-assimilation
2514629864mannitol-builds acid from
2514618394palatinose-assimilation
2514653258sodium citrate-assimilation
2514617992sucrose-builds acid from
2514627082trehalose-assimilation
2514616199urea-hydrolysis
2514685146carboxymethylcellulose+hydrolysis
2514617634D-glucose+assimilation
2514617716lactose+builds acid from
2514617306maltose+assimilation
2514617632nitrate+reduction
2514628017starch+hydrolysis
2514630031succinate+builds base from

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantis sensitive
2514628669bacitracinyesyes
251466104kanamycinyesyes
251468309polymyxin byesyes
2514628971ampicillinyesyes
25146204928cefotaximeyesyes
2514617698chloramphenicolyesyes
2514648923erythromycinyesyes
2514617833gentamicinyesyes
2514628368novobiocinyesyes
2514618208penicillin gyesyes
2514628077rifampicinyesyes
2514617076streptomycinyesyes
2514627902tetracyclineyesyes

metabolite production

  • @ref: 25146
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
25146acid phosphatase+3.1.3.2
25146alkaline phosphatase+3.1.3.1
25146alpha-chymotrypsin+3.4.21.1
25146alpha-fucosidase+3.2.1.51
25146alpha-galactosidase-3.2.1.22
25146alpha-glucosidase+3.2.1.20
25146alpha-mannosidase-3.2.1.24
25146beta-alanine arylamidase pNA-
25146beta-galactosidase-3.2.1.23
25146beta-glucosidase-3.2.1.21
25146beta-glucuronidase-3.2.1.31
25146catalase+1.11.1.6
25146cystine arylamidase-3.4.11.3
25146cytochrome oxidase-1.9.3.1
25146esterase (C 4)+/-
25146esterase Lipase (C 8)+
25146gamma-glutamyltransferase-2.3.2.2
25146glu–gly–arg arylamidase+
25146glutamyl arylamidase pNA+
25146glycin arylamidase-
25146leucine arylamidase+3.4.11.1
25146lipase-
25146lipase (C 14)-
25146lysine decarboxylase-4.1.1.18
25146N-acetyl-beta-glucosaminidase+3.2.1.52
25146naphthol-AS-BI-phosphohydrolase+
25146ornithine decarboxylase-4.1.1.17
25146phosphatase+
25146tripeptide aminopeptidase+3.4.11.4
25146trypsin-3.4.21.4
25146tyrosine arylamidase+
25146urease-3.5.1.5
25146valine arylamidase-
25146xylan 1,4-beta-xylosidase-3.2.1.37

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25146C15:0 anteiso3.8
    25146C15:0 3OH1.8
    25146C15:1ω6c6.8
    25146C16:03.6
    25146C16:0 3OH1.7
    25146C16:1ω7c / C16:1ω6c11.5
    25146C17:0 2OH1
    25146C17:1ω6c3.3
    25146C17:1ω8c1.5
    25146C14:0 iso2
    25146C15:0 iso21.2
    25146C15:0 iso 3OH8.5
    25146C15:1 iso G2.5
    25146C16:0 iso5.8
    25146C16:0 iso 3OH3.7
    25146C16:1 iso H1.7
    25146C17:0 iso 3OH10.7
    25146C17:1 iso ω9c / C16:0 10-methyl3.3
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A
  • agar/liquid: agar
  • incubation temperature: 30
  • incubation time: 2
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA 6
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
25146reclaimed saline land soil at Bunam Lake in Taean-gunPunam Lake (?) in Taean-gunRepublic of KoreaKORAsia
67770Reclaimed saline land soil near a lake in Taean-gunRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Condition#Saline

Sequence information

16S sequences

  • @ref: 25146
  • description: 16S rRNA gene sequence
  • accession: KX158678
  • length: 1443
  • database: ena
  • NCBI tax ID: 1842667

GC content

  • @ref: 25146
  • GC-content: 33.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 25146

culture collection no.: KACC 18743, JCM 31221

literature

  • topic: Phylogeny
  • Pubmed-ID: 27902211
  • title: Flavobacterium eburneum sp. nov., isolated from reclaimed saline land soil.
  • authors: Hwang WM, Kim D, Kang K, Ahn TY
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001568
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Salinity, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25146W. M. K. Hwang, D.,Kang, K.,Ahn, T. Y.Flavobacterium eburneum sp. nov., isolated from reclaimed saline land soil10.1099/ijsem.0.001568IJSEM 67: 55-59 201727902211
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/