Strain identifier

BacDive ID: 133307

Type strain: Yes

Species: Kibdelosporangium metalli

Strain Designation: KC 266

NCBI tax ID(s): 1873421 (species)

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General

@ref: 25152

BacDive-ID: 133307

keywords: 16S sequence, Bacteria, pigmented

description: Kibdelosporangium metalli KC 266 is a bacterium that builds a substrate mycelium and has a black diffusible pigmentation.

NCBI tax id

  • NCBI tax id: 1873421
  • Matching level: species

doi: 10.13145/bacdive133307.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Kibdelosporangium
  • species: Kibdelosporangium metalli
  • full scientific name: Kibdelosporangium metalli Cao et al. 2017

@ref: 25152

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Pseudonocardiales

family: Pseudonocardiaceae

genus: Kibdelosporangium

species: Kibdelosporangium metalli

strain designation: KC 266

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
25152black diffusible pigmentsISP 2
25152light yellow pigmentsNutrient agar

multicellular morphology

@refforms multicellular complexcomplex namecomplex colorfurther description
25152yessubstrate myceliumwhite to brown
25152yesglobular bodiessporangium-like

pigmentation

@refproductioncolor
25152yesblack diffusible
25152yeslight yellow

Culture and growth conditions

culture medium

@refnamegrowth
25152ISP 2yes
25152ISP 3yes
25152ISP 4yes
25152ISP 5yes
25152Nutrient agar (NA)yes

culture temp

@refgrowthtypetemperaturerange
25152positivegrowth20-40
25152positiveoptimum28mesophilic
25152nogrowth45thermophilic

culture pH

@refabilitytypepHPH range
25152positivegrowth4-8acidophile
25152positiveoptimum7

Physiology and metabolism

halophily

@refsalttested relationconcentrationgrowth
25152NaCloptimum3 %
25152NaClgrowth0-10 %(w/v)positive

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2515223652dextrin-carbon source
2515223652dextrin-builds acid from
2515217113erythritol-carbon source
2515217113erythritol-builds acid from
251525291gelatin-hydrolysis
2515215971L-histidine-degradation
2515262345L-rhamnose-carbon source
2515262345L-rhamnose-builds acid from
2515225115malate-builds acid from
2515217632nitrate-reduction
2515216634raffinose-builds acid from
2515253258sodium citrate-carbon source
2515253258sodium citrate-builds acid from
2515250144sodium pyruvate-builds acid from
2515263675sodium succinate-builds acid from
2515230911sorbitol-carbon source
2515230911sorbitol-builds acid from
2515227922sorbose-builds acid from
2515217151xylitol-carbon source
2515217151xylitol-builds acid from
2515217057cellobiose+carbon source
2515217057cellobiose+builds acid from
2515217108D-arabinose+carbon source
2515217108D-arabinose+builds acid from
2515212936D-galactose+builds acid from
2515228757fructose+carbon source
2515228757fructose+builds acid from
2515233984fucose+carbon source
2515233984fucose+builds acid from
2515228260galactose+carbon source
2515217234glucose+carbon source
2515217234glucose+builds acid from
2515217754glycerol+carbon source
2515217754glycerol+builds acid from
2515217368hypoxanthine+degradation
2515217268myo-inositol+carbon source
2515217268myo-inositol+builds acid from
2515216977L-alanine+degradation
2515216467L-arginine+degradation
2515217196L-asparagine+degradation
2515217203L-proline+degradation
2515217895L-tyrosine+degradation
2515217716lactose+carbon source
2515217716lactose+builds acid from
2515225115malate+carbon source
2515217306maltose+carbon source
2515217306maltose+builds acid from
2515229864mannitol+carbon source
2515229864mannitol+builds acid from
2515237684mannose+carbon source
2515237684mannose+builds acid from
2515216634raffinose+carbon source
2515233942ribose+carbon source
2515233942ribose+builds acid from
2515217814salicin+carbon source
2515217814salicin+builds acid from
25152skimmed milk+degradation
2515250144sodium pyruvate+carbon source
2515263675sodium succinate+carbon source
2515228017starch+hydrolysis
2515217992sucrose+carbon source
2515217992sucrose+builds acid from
2515253425tween 60+hydrolysis
2515253426tween 80+hydrolysis
2515216199urea+degradation
2515227266valine+degradation
2515215318xanthine+degradation
2515218222xylose+carbon source
2515218222xylose+builds acid from
2515285146carboxymethylcellulose+/-hydrolysis
2515215356cysteine+/-degradation
2515227922sorbose+/-carbon source

metabolite production

@refChebi-IDmetaboliteproduction
2515216136hydrogen sulfideno
2515289634melaninno

enzymes

@refvalueactivityec
25152catalase+1.11.1.6
25152cytochrome oxidase-1.9.3.1
25152urease+3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    2515210-Methyl C17:00.7
    25152C14:0 anteiso0.1
    25152C15:0 anteiso2.9
    25152C16:0 anteiso0.2
    25152C17:0 anteiso2
    25152C13:00.1
    25152C14:03.1
    25152C16:04.9
    25152C16:1ω7c / C16:1ω5c3
    25152C17:02.1
    25152C17:1ω6c14.2
    25152C17:1ω8c1.5
    25152C18:0 3OH0.2
    25152C18:1ω9c0.1
    25152C13:0 iso0.2
    25152C14:0 iso5.4
    25152C15:0 iso8
    25152C16:0 iso41.7
    25152C16:1 iso H3.9
    25152C17:0 iso0.7
    25152C17:1 iso ω9c / C16:0 10-methyl4.2
    25152C18:0 iso0.5
  • type of FA analysis: whole cell analysis
  • incubation medium: TBS (Difco)
  • agar/liquid: liquid
  • incubation temperature: 28
  • incubation time: 5
  • software version: Sherlock 6.0
  • library/peak naming table: TSBA 6
  • system: MIS MIDI
  • method/protocol: Sasser 1990

Isolation, sampling and environmental information

isolation

  • @ref: 25152
  • sample type: a rare earth mine sample
  • geographic location: Bayan Obo, Inner Mongolia Autonomous region
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Other
  • Cat3: #Mine

taxonmaps

  • @ref: 69479
  • File name: preview.99_183063.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_415;97_470;98_541;99_183063&stattab=map
  • Last taxonomy: Kibdelosporangium metalli
  • 16S sequence: KU992915
  • Sequence Identity:
  • Total samples: 56
  • soil counts: 37
  • animal counts: 1
  • plant counts: 18

Sequence information

16S sequences

  • @ref: 25152
  • description: 16S rRNA gene sequence
  • accession: KU992915
  • length: 1512
  • database: ena
  • NCBI tax ID: 1873421

GC content

  • @ref: 25152
  • GC-content: 67.9
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 25152

culture collection no.: KCTC 39719, CCTCC AA 2016002

literature

  • topic: Phylogeny
  • Pubmed-ID: 27902300
  • title: Kibdelosporangium metalli sp. nov., isolated from a rare earth mine.
  • authors: Cao YR, Yang WQ, Dao Y, Hu B, He ZK, Liang LM
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001578
  • year: 2017
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Mining, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25152Y. R. Y. Cao, W. Q.,Dao, Y.,Hu, B.,He, Z. K.,Liang, L. M.Kibdelosporangium metalli sp. nov., isolated from a rare earth mine10.1099/ijsem.0.001578IJSEM 67: 101-107 201727902300
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/