Strain identifier

BacDive ID: 133305

Type strain: Yes

Species: Streptomyces krungchingensis

Strain Designation: KC-035

Strain history: <- Somboon Tanasupawat, KC-035

NCBI tax ID(s): 1565034 (species)

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General

@ref: 25164

BacDive-ID: 133305

keywords: 16S sequence, Bacteria, aerobe, spore-forming, pigmented

description: Streptomyces krungchingensis KC-035 is an aerobe, spore-forming bacterium that has a yellow to brown pigmentation and was isolated from soil collection.

NCBI tax id

  • NCBI tax id: 1565034
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Somboon Tanasupawat, KC-035

doi: 10.13145/bacdive133305.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces krungchingensis
  • full scientific name: Streptomyces krungchingensis Sripreechasak et al. 2017

@ref: 25164

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces krungchingensis

strain designation: KC-035

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
25164yellow to brownISP5
25164White to light-greenish greyISP2
25164White to light-greenish greyISP3
25164White to light-greenish greyISP4
25164White to light-greenish greyNutrient Agar

pigmentation

  • @ref: 25164
  • production: yes
  • color: yellow to brown

Culture and growth conditions

culture medium

@refnamegrowth
25164ISP 5yes
25164ISP 2yes
25164ISP 3yes
25164ISP 4yes
25164Nutrient agar (NA)yes

culture temp

@refgrowthtypetemperaturerange
25164positivegrowth15-37
67771positivegrowth28mesophilic

culture pH

  • @ref: 25164
  • ability: positive
  • type: growth
  • pH: 5-9
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
25164aerobe
67771aerobe

spore formation

  • @ref: 25164
  • spore description: flexuous spore chains
  • type of spore: spore
  • spore formation: yes

halophily

  • @ref: 25164
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-6 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2516462968cellulose-assimilation
2516417924D-sorbitol-assimilation
2516430849L-arabinose-assimilation
251646731melezitose-assimilation
25164skimmed milk-degradation
2516417057cellobiose+carbon source
2516416899D-mannitol+carbon source
2516416024D-mannose+carbon source
2516428757fructose+carbon source
2516417268myo-inositol+carbon source
2516417632nitrate+reduction
2516416634raffinose+carbon source
2516433942ribose+carbon source
2516428017starch+hydrolysis
2516417992sucrose+carbon source
2516465327D-xylose+/-assimilation
251645291gelatin+/-hydrolysis
2516417814salicin+/-assimilation

metabolite production

  • @ref: 25164
  • Chebi-ID: 89634
  • metabolite: melanin
  • production: yes

enzymes

@refvalueactivityec
25164acid phosphatase+3.1.3.2
25164alkaline phosphatase+3.1.3.1
25164alpha-chymotrypsin-3.4.21.1
25164alpha-fucosidase-3.2.1.51
25164alpha-galactosidase-3.2.1.22
25164alpha-glucosidase-3.2.1.20
25164alpha-mannosidase-3.2.1.24
25164beta-galactosidase+3.2.1.23
25164beta-glucosidase+/-3.2.1.21
25164beta-glucuronidase-3.2.1.31
25164cystine arylamidase-3.4.11.3
25164esterase (C 4)+
25164esterase Lipase (C 8)+/-
25164leucine arylamidase+3.4.11.1
25164lipase (C 14)-
25164N-acetyl-beta-glucosaminidase+3.2.1.52
25164naphthol-AS-BI-phosphohydrolase+/-
25164trypsin-3.4.21.4
25164valine arylamidase+/-

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25164C13:0 anteiso0.7
    25164C15:0 anteiso18.9
    25164C17:0 anteiso3.8
    25164C17:1 anteiso ω9c0.9
    25164C12:00.7
    25164C13:00.5
    25164C14:03.7
    25164C16:015.6
    25164C16:0 10-methyl / iso-C17:1ω9c0.8
    25164C16:1ω7c / C16:1ω6c5.2
    25164C17:01.3
    25164C17:0cyclo0.6
    25164C17:1ω8c0.9
    25164C18:00.5
    25164C18:1ω7c / C18:1ω6c0.5
    25164C18:1ω9c1.3
    25164C12:0 iso0.7
    25164C13:0 iso0.8
    25164C14:0 iso9.3
    25164C15:0 iso9.8
    25164C16:0 iso14.5
    25164C16:1 iso H0.9
    25164C17:0 iso2
    25164C17:0 iso 3OH0.6
  • type of FA analysis: whole cell analysis
  • incubation medium: yeast-dextrose broth
  • agar/liquid: liquid
  • incubation temperature: 30
  • incubation time: 5
  • incubation pH: 7.00
  • software version: Sherlock 6.0
  • library/peak naming table: RTSBA 6
  • system: MIS MIDI
  • method/protocol: Sasser 1990

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
25164soil collectionKrung Ching Waterfall National Park, Nakhon Si Thammarat ProvinceThailandTHAAsia
67771from soil collected from Krung Ching Waterfall National ParkNakhon Si Thammarat ProvinceThailandTHAAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Sequence information

16S sequences

  • @ref: 25164
  • description: 16S rRNA gene sequence
  • accession: LC008304
  • length: 1494
  • database: ena
  • NCBI tax ID: 1565034

GC content

  • @ref: 25164
  • GC-content: 72
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 25164

culture collection no.: NBRC 110087, KCTC 29503, TISTR 2402

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27902254Streptomyces krungchingensis sp. nov., isolated from soil.Sripreechasak P, Phongsopitanun W, Tamura T, Tanasupawat SInt J Syst Evol Microbiol10.1099/ijsem.0.0015702017Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny30168793Streptomyces dengpaensis sp. nov., an actinomycete isolated from desert soil.Li Y, Li Y, Wang LW, Bao JInt J Syst Evol Microbiol10.1099/ijsem.0.0029942018Actinobacteria/genetics, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, *Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Tibet, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25164P. P. Sripreechasak, W.,Tamura, T.,Tanasupawat, S.Streptomyces krungchingensis sp. nov., isolated from soil10.1099/ijsem.0.001570IJSEM 67: 50-54 201727902254
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc