Strain identifier

BacDive ID: 133297

Type strain: Yes

Species: Altererythrobacter sediminis

Culture col. no.: CAU 1172, KCTC 42453, NBRC 110917

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General

@ref: 25068

BacDive-ID: 133297

keywords: coccus-shaped, gram-negative, aerobe, Bacteria, 16S sequence, genome sequence, colony-forming

description: Altererythrobacter sediminis CAU 1172 is an aerobe, gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from sample of lagoon sediment.

doi: 10.13145/bacdive133297.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Erythrobacteraceae
  • genus: Altererythrobacter
  • species: Altererythrobacter sediminis
  • full scientific name: Altererythrobacter sediminis Kim et al. 2016
  • synonyms

    • @ref: 20215
    • synonym: Pontixanthobacter sediminis

@ref: 25068

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Erythrobacteraceae

genus: Altererythrobacter

species: Altererythrobacter sediminis

type strain: yes

Morphology

cell morphology

  • @ref: 25068
  • gram stain: negative
  • cell length: 1.5-3.3 µm
  • cell width: 0.2-0.5 µm
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 25068
  • colony color: yellow
  • colony shape: circular
  • incubation period: 3 days
  • medium used: MA (marine agar)

pigmentation

  • @ref: 25068
  • production: yes
  • name: Carotenoid pigments

Culture and growth conditions

culture medium

  • @ref: 25068
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25068positivegrowth20.0-37.0
25068positiveoptimum30mesophilic

culture pH

@refabilitytypepH
25068positivegrowth6.5-10.0
25068positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 25068
  • oxygen tolerance: aerobe

spore formation

  • @ref: 25068
  • spore formation: no

halophily

@refsalttested relationconcentrationgrowth
25068NaCloptimum1 %
25068NaClgrowth0.0-4.0 %(w/v)positive

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2506817128adipate-assimilation
25068casein-hydrolysis
2506816947citrate-carbon source
2506816899D-mannitol-assimilation
2506816024D-mannose-assimilation
2506827689decanoate-assimilation
250685291gelatin-hydrolysis
2506830849L-arabinose-assimilation
2506825115malate-assimilation
2506817306maltose-assimilation
25068506227N-acetylglucosamine-assimilation
2506817632nitrate-reduction
2506818401phenylacetate-assimilation
2506832032potassium gluconate-assimilation
2506853258sodium citrate-assimilation
2506828017starch-hydrolysis
2506827897tryptophan-energy source
2506816199urea-hydrolysis
250684853esculin+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
2506816136hydrogen sulfideno
2506835581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testcitrate test
2506835581indole-
2506816947citrate-

enzymes

@refvalueactivityec
25068acid phosphatase-3.1.3.2
25068alkaline phosphatase+3.1.3.1
25068alpha-chymotrypsin+3.4.21.1
25068alpha-fucosidase-3.2.1.51
25068alpha-galactosidase-3.2.1.22
25068alpha-glucosidase-3.2.1.20
25068alpha-mannosidase-3.2.1.24
25068arginine dihydrolase+3.5.3.6
25068beta-galactosidase-3.2.1.23
25068beta-glucosidase-3.2.1.21
25068beta-glucuronidase-3.2.1.31
25068catalase+1.11.1.6
25068cystine arylamidase-3.4.11.3
25068cytochrome oxidase-1.9.3.1
25068esterase (C 4)+
25068esterase Lipase (C 8)+
25068leucine arylamidase-3.4.11.1
25068lipase (C 14)-
25068N-acetyl-beta-glucosaminidase-3.2.1.52
25068naphthol-AS-BI-phosphohydrolase+
25068trypsin-3.4.21.4
25068tryptophan deaminase-4.1.99.1
25068valine arylamidase-

Isolation, sampling and environmental information

isolation

  • @ref: 25068
  • sample type: sample of lagoon sediment
  • geographic location: east coast
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia
  • latitude: 38
  • longitude: 128
  • enrichment culture: MA (marine agar 2216; Difco)
  • enrichment culture duration: 10 days
  • enrichment culture temperature: 30
  • isolation procedure: dilution plating method

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic
#Environmental#Aquatic#Sediment

Sequence information

16S sequences

  • @ref: 25068
  • description: Altererythrobacter sp. CAU1172 16S ribosomal RNA gene, partial sequence
  • accession: KP779619
  • length: 1457
  • database: nuccore
  • NCBI tax ID: 1689985

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Altererythrobacter sediminis KCTC 42453GCA_009828115contigncbi1689985
66792Altererythrobacter sediminis strain KCTC 424531689985.3wgspatric1689985

GC content

  • @ref: 25068
  • GC-content: 63.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 25068

culture collection no.: CAU 1172, KCTC 42453, NBRC 110917

Reference

@idauthorstitledoi/urljournal
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
25068J. H. Y. Kim, J. H.,Kim, W.Altererythrobacter sediminis sp. nov., isolated from lagoon sediments10.1099/ijsem.0.001535IJSEM 66: 5424-5429 2016
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes