Strain identifier

BacDive ID: 133281

Type strain: Yes

Species: Psychrobacter pocilloporae

Strain Designation: S6-60

Strain history: S. K. Das; Inst. of Life Sci., India; S6-60.

NCBI tax ID(s): 1775882 (species)

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General

@ref: 25112

BacDive-ID: 133281

keywords: 16S sequence, Bacteria, aerobe, heterotroph, Gram-negative, rod-shaped

description: Psychrobacter pocilloporae S6-60 is an aerobe, heterotroph, Gram-negative bacterium that was isolated from mucus of the coral Pocillopora eydouxi.

NCBI tax id

  • NCBI tax id: 1775882
  • Matching level: species

strain history

  • @ref: 67770
  • history: S. K. Das; Inst. of Life Sci., India; S6-60.

doi: 10.13145/bacdive133281.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Psychrobacter
  • species: Psychrobacter pocilloporae
  • full scientific name: Psychrobacter pocilloporae Zachariah et al. 2016

@ref: 25112

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter pocilloporae

strain designation: S6-60

type strain: yes

Morphology

cell morphology

  • @ref: 25112
  • gram stain: negative
  • cell length: 1.6-1.9 µm
  • cell width: 0.9-1.1 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 25112
  • colony size: 0.5-1.0 mm
  • colony color: cream
  • incubation period: 2 days
  • medium used: MA (marine agar)

Culture and growth conditions

culture medium

  • @ref: 25112
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25112positivegrowth4.0-37.0
25112positiveoptimum25.0-30.0mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
25112positivegrowth6.5-10.0alkaliphile
25112positiveoptimum7.0-9.0

Physiology and metabolism

oxygen tolerance

  • @ref: 25112
  • oxygen tolerance: aerobe

nutrition type

  • @ref: 25112
  • type: heterotroph

spore formation

  • @ref: 25112
  • spore formation: no

halophily

  • @ref: 25112
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0.0-12.0 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2511230089acetate-assimilation
2511217128adipate-assimilation
25112casein-hydrolysis
2511216947citrate-carbon source
2511215824D-fructose-builds acid from
2511215824D-fructose-respiration
2511215748D-glucuronate-respiration
2511216634raffinose-respiration
2511227689decanoate-assimilation
2511216991dna-hydrolysis
251124853esculin-hydrolysis
2511216000ethanolamine-respiration
2511215740formate-respiration
251125291gelatin-hydrolysis
2511217754glycerol-respiration
2511217268myo-inositol-respiration
2511262345L-rhamnose-respiration
2511225115malate-assimilation
2511217306maltose-builds acid from
2511217306maltose-respiration
2511228037N-acetylgalactosamine-respiration
25112506227N-acetylglucosamine-respiration
2511218401phenylacetate-assimilation
2511232032potassium gluconate-assimilation
2511215361pyruvate-assimilation
2511228017starch-hydrolysis
2511230031succinate-assimilation
2511217992sucrose-respiration
2511253424tween 20-hydrolysis
2511253426tween 80-hydrolysis
2511216704uridine-respiration
25112645522-hydroxybutyrate+respiration
25112370543-hydroxybutyrate+respiration
2511230089acetate+respiration
2511273706bromosuccinate+respiration
2511217108D-arabinose+builds acid from
2511212936D-galactose+builds acid from
2511217634D-glucose+builds acid from
2511265327D-xylose+builds acid from
2511216865gamma-aminobutyric acid+respiration
2511216977L-alanine+respiration
2511230849L-arabinose+builds acid from
2511215971L-histidine+respiration
2511217203L-proline+respiration
2511262345L-rhamnose+builds acid from
2511217115L-serine+respiration
2511224996lactate+respiration
2511217716lactose+builds acid from
2511251850methyl pyruvate+respiration
2511275146monomethyl succinate+respiration
2511273784glycyl-l-glutamate+respiration
2511217632nitrate+reduction
2511217272propionate+respiration
2511230031succinate+respiration
2511218186tyrosine+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
2511228971ampicillinyesno10 µg (disc)
2511217076streptomycinyesno30 µg (disc)
2511227902tetracyclineyesyes30 µg (disc)

metabolite production

  • @ref: 25112
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

metabolite tests

  • @ref: 25112
  • Chebi-ID: 16947
  • metabolite: citrate
  • citrate test: -

enzymes

@refvalueactivityec
25112acid phosphatase+3.1.3.2
25112alkaline phosphatase+3.1.3.1
25112arginine dihydrolase-3.5.3.6
25112catalase+1.11.1.6
25112cytochrome oxidase+1.9.3.1
25112esterase (C 4)+
25112lysine decarboxylase-4.1.1.18
25112naphthol-AS-BI-phosphohydrolase-
25112ornithine decarboxylase-4.1.1.17
25112urease+3.5.1.5
25112valine arylamidase-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudehost species
25112mucus of the coral Pocillopora eydouxiNorth Bay island,Andaman SeaIndiaINDAsia1192
67770Mucus of the coral, Pocillopora eydouxiAndaman SeaIndiaINDAsiaPocillopora eydouxi

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Cnidaria (Corals)

taxonmaps

  • @ref: 69479
  • File name: preview.99_4557.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_2757;98_3425;99_4557&stattab=map
  • Last taxonomy: Psychrobacter
  • 16S sequence: KT444699
  • Sequence Identity:
  • Total samples: 906
  • soil counts: 55
  • aquatic counts: 504
  • animal counts: 339
  • plant counts: 8

Sequence information

16S sequences

  • @ref: 25112
  • description: Psychrobacter sp. S6-60 16S ribosomal RNA gene, partial sequence
  • accession: KT444699
  • length: 1405
  • database: nuccore
  • NCBI tax ID: 1775882

GC content

  • @ref: 25112
  • GC-content: 47.7
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 25112

culture collection no.: JCM 31058, LMG 29157, CIP 111450

literature

  • topic: Phylogeny
  • Pubmed-ID: 27609593
  • title: Psychrobacter pocilloporae sp. nov., isolated from a coral, Pocillopora eydouxi.
  • authors: Zachariah S, Kumari P, Das SK
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001476
  • year: 2016
  • mesh: Animals, Anthozoa/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Psychrobacter/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25112S. K. Zachariah, P.,Das, S. K.Psychrobacter pocilloporae sp. nov., isolated from a coral, Pocillopora eydouxi10.1099/ijsem.0.001476IJSEM 66: 5091-5098 201627609593
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/