Strain identifier

BacDive ID: 133275

Type strain: Yes

Species: Nitratireductor lacus

Strain Designation: GSS14

NCBI tax ID(s): 1903171 (species)

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General

@ref: 25133

BacDive-ID: 133275

keywords: 16S sequence, Bacteria, Gram-negative, motile, ovoid-shaped, colony-forming

description: Nitratireductor lacus GSS14 is a Gram-negative, motile, ovoid-shaped bacterium that forms circular colonies and was isolated from sediment.

NCBI tax id

  • NCBI tax id: 1903171
  • Matching level: species

doi: 10.13145/bacdive133275.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Nitratireductor
  • species: Nitratireductor lacus
  • full scientific name: Nitratireductor lacus Yu et al. 2016

@ref: 25133

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Phyllobacteriaceae

genus: Nitratireductor

species: Nitratireductor lacus

strain designation: GSS14

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
25133negative1.0-2.0 µm0.6-0.8 µmovoid-shapedyes
25133rod-shaped

colony morphology

  • @ref: 25133
  • colony size: 2.0-3.0 mm
  • colony color: cream and faintly pink centre
  • colony shape: circular
  • incubation period: 3 days
  • medium used: MA (marine agar)

Culture and growth conditions

culture medium

@refnamegrowth
25133MA (marine agar 2216) platesyes
25133Marine agar (MA)yes

culture temp

@refgrowthtypetemperaturerange
25133positivegrowth10.0-45.0
25133positiveoptimum37mesophilic

culture pH

@refabilitytypepHPH range
25133positivegrowth6.5-11.0alkaliphile
25133positiveoptimum7

Physiology and metabolism

halophily

@refsalttested relationconcentrationgrowth
25133NaCloptimum6 %
25133NaClgrowth0.0-12.0 %(w/v)positive

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
25133168082-dehydro-D-gluconate-assimilation
25133161933-hydroxybenzoate-assimilation
25133581435-dehydro-D-gluconate-assimilation
2513317128adipate-assimilation
2513317634D-glucose-fermentation
2513316899D-mannitol-assimilation
2513317924D-sorbitol-assimilation
2513327689decanoate-assimilation
251335291gelatin-hydrolysis
2513317240itaconate-assimilation
2513330849L-arabinose-assimilation
2513362345L-rhamnose-assimilation
2513317115L-serine-assimilation
2513328053melibiose-assimilation
2513332032potassium gluconate-assimilation
2513317272propionate-assimilation
2513317814salicin-assimilation
2513362983sodium malonate-assimilation
251339300suberic acid-assimilation
2513327897tryptophan-energy source
25133370543-hydroxybutyrate+assimilation
25133178794-hydroxybenzoate+assimilation
2513317634D-glucose+assimilation
2513316024D-mannose+assimilation
2513316988D-ribose+assimilation
251334853esculin+hydrolysis
2513328087glycogen+assimilation
2513317268myo-inositol+assimilation
2513316977L-alanine+assimilation
2513318287L-fucose+assimilation
2513315971L-histidine+assimilation
2513317203L-proline+assimilation
2513324996lactate+assimilation
2513325115malate+assimilation
2513317306maltose+assimilation
25133506227N-acetylglucosamine+assimilation
2513317632nitrate+reduction
2513318401phenylacetate+assimilation
2513332954sodium acetate+assimilation
2513353258sodium citrate+assimilation
2513317992sucrose+assimilation
2513331011valerate+assimilation

metabolite production

  • @ref: 25133
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 25133
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
25133acid phosphatase+3.1.3.2
25133alkaline phosphatase+3.1.3.1
25133alpha-chymotrypsin-3.4.21.1
25133alpha-fucosidase-3.2.1.51
25133alpha-galactosidase-3.2.1.22
25133alpha-glucosidase+3.2.1.20
25133alpha-mannosidase-3.2.1.24
25133arginine dihydrolase+3.5.3.6
25133beta-galactosidase-3.2.1.23
25133beta-glucuronidase-3.2.1.31
25133catalase+1.11.1.6
25133cystine arylamidase+3.4.11.3
25133cytochrome oxidase+1.9.3.1
25133esterase (C 4)+
25133esterase Lipase (C 8)+
25133leucine arylamidase+3.4.11.1
25133lipase (C 14)-
25133N-acetyl-beta-glucosaminidase+3.2.1.52
25133naphthol-AS-BI-phosphohydrolase+
25133trypsin+3.4.21.4
25133tryptophan deaminase-4.1.99.1
25133urease+3.5.1.5
25133valine arylamidase+

Isolation, sampling and environmental information

isolation

  • @ref: 25133
  • sample type: sediment
  • geographic location: Yuncheng Salt Lake in Shanxi Province
  • country: Republic of China
  • origin.country: CHN
  • continent: Asia
  • latitude: 34
  • longitude: 111
  • isolation procedure: standard dilution plating

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_22251.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_2450;97_2989;98_16781;99_22251&stattab=map
  • Last taxonomy: Nitratireductor lacus subclade
  • 16S sequence: KX531008
  • Sequence Identity:
  • Total samples: 316
  • soil counts: 71
  • aquatic counts: 175
  • animal counts: 67
  • plant counts: 3

Sequence information

16S sequences

  • @ref: 25133
  • description: Nitratireductor sp. strain GSS14 16S ribosomal RNA gene, partial sequence
  • accession: KX531008
  • length: 1487
  • database: nuccore
  • NCBI tax ID: 1903171

GC content

  • @ref: 25133
  • GC-content: 61
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 25133

culture collection no.: KCTC 52186, MCCC 1K02481

literature

  • topic: Phylogeny
  • Pubmed-ID: 27562657
  • title: Nitratireductor lacus sp. nov., isolated from Yuncheng Salt Lake, China.
  • authors: Yu Z, Zhuang L, Pan J, Wang Y, Zhou S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001453
  • year: 2016
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes/*microbiology, Nucleic Acid Hybridization, Phyllobacteriaceae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25133Z. Z. Yu, L.,Pan, J.,Wang, Y.,Zhou, S.Nitratireductor lacus sp. nov., isolated from Yuncheng Salt Lake, China10.1099/ijsem.0.001453IJSEM 66: 4963-4967 201627562657
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/