Strain identifier

BacDive ID: 133262

Type strain: No

Species: Roseivirga ehrenbergii

Strain Designation: SW-152

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 1914963 (species), 1914965 (subspecies)

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General

@ref: 25046

BacDive-ID: 133262

keywords: 16S sequence, Bacteria, aerobe, motile, colony-forming, pigmented

description: Roseivirga ehrenbergii SW-152 is an aerobe, motile bacterium that forms circular colonies and has a orange pigmentation.

NCBI tax id

NCBI tax idMatching level
1914965subspecies
1914963species

strain history

@refhistory
67770J.-H. Yoon SW-152.
67771<- JH Yoon, KRIBB

doi: 10.13145/bacdive133262.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Roseivirgaceae
  • genus: Roseivirga
  • species: Roseivirga ehrenbergii
  • full scientific name: Roseivirga ehrenbergii Nedashkovskaya et al. 2005

  • synonyms

    @refsynonym
    20215Roseivirga seohaensis
    20215Marinicola seohaensis

@ref: 25046

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Flammeovirgaceae

genus: Roseivirga

species: Roseivirga ehrenbergii

strain designation: SW-152

type strain: no

Morphology

cell morphology

@refcell lengthcell widthmotilitygram staincell shapeflagellum arrangement
250461.1 µm0.5-0.6 µmyes
250461.4-2.5 µm0.5-0.7 µmnegativerod-shaped
314133 µm0.25 µmyesnegativerod-shapedgliding
67771rod-shaped
67771negative

colony morphology

  • @ref: 25046
  • colony size: 1.0-3.0 mm
  • colony shape: circular
  • incubation period: 2 days
  • medium used: MA

pigmentation

@refproductioncolor
25046yesorange
25046yespink
31413yes

Culture and growth conditions

culture medium

  • @ref: 25046
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperature
25046positivegrowth4-40
25046positiveoptimum37
31413positivegrowth04-40
31413positiveoptimum30
67770positivegrowth30
67771positivegrowth30

culture pH

@refabilitytypepHPH range
25046positivegrowth5.5-9.0alkaliphile
25046positivegrowth5.0-10.0
25046positiveoptimum7
31413positivegrowth5.5-8.0
31413positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
25046aerobe
31413aerobe
67771aerobe

spore formation

  • @ref: 31413
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
25046NaClpositivegrowth2.0-9.0 %(w/v)
25046NaClpositivegrowth2.0-5.0 %(w/v)
25046NaCloptimum2 %(w/v)
31413NaClpositivegrowth<9 %
31413NaClpositiveoptimum2.5 %

observation

@refobservation
67770quinones: MK-7
67771quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2504617632nitrate-reduction
25046168082-dehydro-D-gluconate+builds acid from
25046174265-dehydro-D-gluconate+builds acid from
2504617924D-sorbitol+builds acid from
25046esculin ferric citrate+builds acid from
2504617895L-tyrosine+hydrolysis
2504653424tween 20+hydrolysis
2504653423tween 40+hydrolysis
2504653425tween 60+hydrolysis
2504653426tween 80+hydrolysis
3141353424tween 20+carbon source
3141353423tween 40+carbon source
3141353425tween 60+carbon source
3141353426tween 80+carbon source

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
2504628669bacitracinyesyes45 µg (disc)
250466472lincomycinyesyes30 µg (disc)
250468309polymyxin byesyes300 Unit (disc)
2504628669bacitracinyesno45 µg (disc)
250466472lincomycinyesno30 µg (disc)
250468309polymyxin byesno300 Unit (disc)

enzymes

@refvalueactivityec
25046N-acetyl-beta-glucosaminidase+3.2.1.52
25046alpha-glucosidase-3.2.1.20
25046beta-galactosidase-3.2.1.23
25046beta-glucosidase-3.2.1.21
25046cystine arylamidase+3.4.11.3
25046N-acetyl-beta-glucosaminidase-3.2.1.52
25046trypsin-3.4.21.4
25046acid phosphatase+3.1.3.2
25046alkaline phosphatase+3.1.3.1
25046alpha-chymotrypsin+3.4.21.1
25046alpha-mannosidase+3.2.1.24
25046esterase (C 4)+
25046esterase lipase (C 8)+
25046leucine arylamidase+3.4.11.1
25046trypsin+3.4.21.4
31413acid phosphatase+3.1.3.2
31413alkaline phosphatase+3.1.3.1
31413catalase+1.11.1.6
31413cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment culture durationenrichment culture temperatureisolation dateisolation procedure
25046seawaterDesaru Beach, JohorMalaysiaMYSAsia2 days302013-09standard serial dilution technique
67770Seawater of the Yellow SeaRepublic of KoreaKORAsia
67771From seawaterthe West SeaRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_4834.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_492;96_2388;97_2904;98_3620;99_4834&stattab=map
  • Last taxonomy: Roseivirga
  • 16S sequence: AY739663
  • Sequence Identity:
  • Total samples: 1110
  • soil counts: 42
  • aquatic counts: 992
  • animal counts: 68
  • plant counts: 8

Sequence information

16S sequences

  • @ref: 31413
  • description: Marinicola seohaensis strain SW-152 16S ribosomal RNA gene, partial sequence
  • accession: AY739663
  • length: 1472
  • database: nuccore
  • NCBI tax ID: 1914963

GC content

@refGC-contentmethod
2504639.3high performance liquid chromatography (HPLC)
6777040.3high performance liquid chromatography (HPLC)
6777040.7thermal denaturation, midpoint method (Tm)
6777140.3

External links

@ref: 25046

culture collection no.: JCM 12600, KCTC 12312, CIP 108749

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15774675Marinicola seohaensis gen. nov., sp. nov., isolated from sea water of the Yellow Sea, Korea.Yoon JH, Kang SJ, Lee CH, Oh TKInt J Syst Evol Microbiol10.1099/ijs.0.63492-02005Bacterial Typing Techniques, Cytophagaceae/*classification/genetics/isolation & purification/physiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Korea, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNAGenetics
Phylogeny18450712Reclassification of Roseivirga seohaensis (Yoon et al. 2005) Lau et al. 2006 as a later synonym of Roseivirga ehrenbergii Nedashkovskaya et al. 2005 and emendation of the species description.Nedashkovskaya OI, Kim SB, Lysenko AM, Kalinovskaya NI, Mikhailov VVInt J Syst Evol Microbiol10.1099/ijs.0.65686-02008Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/genetics/physiology, DNA, Bacterial/analysis/genetics/isolation & purification, Genes, rRNA, Genomics, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityGenetics
Phylogeny28077207Proposal to reclassify Roseivirga ehrenbergii (Nedashkovskaya et al., 2008) as Roseivirga seohaensis comb. nov., description of Roseivirga seohaensis subsp. aquiponti subsp. nov. and emendation of the genus Roseivirga.Selvaratnam C, Thevarajoo S, Goh KM, Chan KG, Chong CSInt J Syst Evol Microbiol10.1099/ijsem.0.0015532016Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Malaysia, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmedID_cross_reference
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25046C. T. Selvaratnam, S.,Goh, K. M.,Chan, K. G.,Chong, C. S.Proposal to reclassify Roseivirga ehrenbergii (Nedashkovskaya et al., 2008) as Roseivirga seohaensis comb. nov., description of Roseivirga seohaensis subsp. aquiponti subsp. nov. and emendation of the genus Roseivirga10.1099/ijsem.0.001553IJSEM 66: 5537-5543 201628077207
31413Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172877604127720
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/