Strain identifier
BacDive ID: 13326
Type strain: 
Species: Pseudonocardia autotrophica
Strain Designation: 543
Strain history: <- R.E. Gordon, 543 <- E.N. Azarowicz (Nocardia coeliaca)
NCBI tax ID(s): 2074 (species)
version 8.1 (current version)
General
@ref: 10746
BacDive-ID: 13326
DSM-Number: 43083
keywords: genome sequence, Bacteria, spore-forming, mesophilic, human pathogen
description: Pseudonocardia autotrophica 543 is a spore-forming, mesophilic human pathogen of the family Pseudonocardiaceae.
NCBI tax id
- NCBI tax id: 2074
- Matching level: species
strain history
- @ref: 10746
- history: <- R.E. Gordon, 543 <- E.N. Azarowicz (Nocardia coeliaca)
doi: 10.13145/bacdive13326.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Pseudonocardia
- species: Pseudonocardia autotrophica
- full scientific name: Pseudonocardia autotrophica (Takamiya and Tubaki 1956) Warwick et al. 1994
synonyms
@ref synonym 20215 Proactinomyces autotrophicus 20215 Streptomyces autotrophicus 20215 Nocardia autotrophica 20215 Amycolata autotrophica
@ref: 10746
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Pseudonocardia
species: Pseudonocardia autotrophica
full scientific name: Pseudonocardia autotrophica (Takamiya and Tubaki 1956) Warwick et al. 1994 emend. Nouioui et al. 2018
strain designation: 543
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 95.358 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 10746
- name: GYM+S MEDIUM (DSMZ Medium 214)
- growth: yes
- link: https://mediadive.dsmz.de/medium/214
- composition: Name: GYM+S MEDIUM (DSMZ Medium 214) Composition: Starch 20.0 g/l Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 10746
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: yes
- confidence: 93
Safety information
risk assessment
- @ref: 10746
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudonocardia autotrophica DSM 43083 | GCA_001902615 | scaffold | ncbi | 2074 |
| 66792 | Pseudonocardia autotrophica strain DSM 43083 | 2074.5 | wgs | patric | 2074 |
| 66792 | Pseudonocardia autotrophica DSM 43083 | 2856658706 | draft | img | 2074 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 93 | no |
| flagellated | no | 97.661 | no |
| gram-positive | yes | 91.328 | no |
| anaerobic | no | 99.102 | no |
| aerobic | yes | 94.418 | no |
| halophile | no | 81.117 | no |
| spore-forming | yes | 64.411 | no |
| glucose-util | yes | 89.034 | no |
| thermophile | no | 99.352 | no |
| motile | no | 92.248 | no |
| glucose-ferment | no | 92.045 | no |
External links
@ref: 10746
culture collection no.: DSM 43083, IMRU 543
straininfo link
- @ref: 82526
- straininfo: 50149
literature
- topic: Genetics
- Pubmed-ID: 28153904
- title: Draft Genome Sequence of Pseudonocardia autotrophica Strain DSM 43083, an Efficient Producer of Peroxidases for Lignin Modification.
- authors: Grumaz C, Rais D, Kirstahler P, Vainshtein Y, Rupp S, Zibek S, Sohn K
- journal: Genome Announc
- DOI: 10.1128/genomeA.01562-16
- year: 2017
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10746 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43083) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43083 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 82526 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50149.1 | StrainInfo: A central database for resolving microbial strain identifiers |