Strain identifier
BacDive ID: 13325
Type strain: 
Species: Pseudonocardia autotrophica
Strain history: <- R.E. Gordon, IMRU <- W.C. Haynes NRRL (Nocardia coeliaca) <- W.T. Sokolski <- E.W. Emmart
NCBI tax ID(s): 2074 (species)
version 8.1 (current version)
General
@ref: 10745
BacDive-ID: 13325
DSM-Number: 43082
keywords: genome sequence, Bacteria, mesophilic, human pathogen
description: Pseudonocardia autotrophica DSM 43082 is a mesophilic human pathogen of the family Pseudonocardiaceae.
NCBI tax id
- NCBI tax id: 2074
- Matching level: species
strain history
- @ref: 10745
- history: <- R.E. Gordon, IMRU <- W.C. Haynes NRRL (Nocardia coeliaca) <- W.T. Sokolski <- E.W. Emmart
doi: 10.13145/bacdive13325.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Pseudonocardia
- species: Pseudonocardia autotrophica
- full scientific name: Pseudonocardia autotrophica (Takamiya and Tubaki 1956) Warwick et al. 1994
synonyms
@ref synonym 20215 Proactinomyces autotrophicus 20215 Streptomyces autotrophicus 20215 Nocardia autotrophica 20215 Amycolata autotrophica
@ref: 10745
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Pseudonocardia
species: Pseudonocardia autotrophica
full scientific name: Pseudonocardia autotrophica (Takamiya and Tubaki 1956) Warwick et al. 1994 emend. Nouioui et al. 2018
type strain: no
Culture and growth conditions
culture medium
- @ref: 10745
- name: GYM+S MEDIUM (DSMZ Medium 214)
- growth: yes
- link: https://mediadive.dsmz.de/medium/214
- composition: Name: GYM+S MEDIUM (DSMZ Medium 214) Composition: Starch 20.0 g/l Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 10745
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Safety information
risk assessment
- @ref: 10745
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Pseudonocardia autotrophica strain DSM 43082
- accession: 2074.7
- assembly level: plasmid
- database: patric
- NCBI tax ID: 2074
External links
@ref: 10745
culture collection no.: DSM 43082, IMRU 418, NRRL B-1365
straininfo link
- @ref: 82525
- straininfo: 50148
literature
- topic: Enzymology
- Pubmed-ID: 21144838
- title: Construction of a novel expression vector in Pseudonocardia autotrophica and its application to efficient biotransformation of compactin to pravastatin, a specific HMG-CoA reductase inhibitor.
- authors: Fujii Y, Norihisa K, Fujii T, Aritoku Y, Kagawa Y, Sallam KI, Johdo O, Arisawa A, Tamura T
- journal: Biochem Biophys Res Commun
- DOI: 10.1016/j.bbrc.2010.12.013
- year: 2010
- mesh: Acetone/pharmacology, Base Sequence, Biotransformation, Cloning, Molecular, Cytochrome P-450 Enzyme System/*genetics, Gene Expression/drug effects, Genetic Engineering, Genetic Vectors/*genetics, Hydroxymethylglutaryl-CoA Reductase Inhibitors/*metabolism, Industrial Microbiology/methods, Lovastatin/*analogs & derivatives/metabolism, Molecular Sequence Data, Plasmids/genetics, Pravastatin/*biosynthesis, Promoter Regions, Genetic/drug effects, Replication Origin, Streptomyces/genetics/*metabolism
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10745 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43082) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43082 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 82525 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50148.1 | StrainInfo: A central database for resolving microbial strain identifiers |