Strain identifier

BacDive ID: 133233

Type strain: Yes

Species: Nonomuraea purpurea

Strain Designation: 1SM4-01

NCBI tax ID(s): 1849276 (species)

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General

@ref: 25139

BacDive-ID: 133233

keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, pigmented

description: Nonomuraea purpurea 1SM4-01 is an aerobe, spore-forming, Gram-positive bacterium that has a light brown pigmentation and was isolated from soil in the mangrove forest.

NCBI tax id

  • NCBI tax id: 1849276
  • Matching level: species

doi: 10.13145/bacdive133233.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Nonomuraea
  • species: Nonomuraea purpurea
  • full scientific name: Nonomuraea purpurea Suksaard et al. 2016

@ref: 25139

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptosporangiales

family: Streptosporangiaceae

genus: Nonomuraea

species: Nonomuraea purpurea

strain designation: 1SM4-01

type strain: yes

Morphology

cell morphology

  • @ref: 25139
  • gram stain: positive

colony morphology

  • @ref: 25139
  • medium used: ISP 2, ISP 3 and GYE agar

pigmentation

  • @ref: 25139
  • production: yes
  • color: light brown

Culture and growth conditions

culture medium

  • @ref: 25139
  • name: ISP 2, ISP 3 and GYE agar
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25139positiveoptimum20-30
25139nogrowth37mesophilic

culture pH

  • @ref: 25139
  • ability: positive
  • type: optimum
  • pH: 6.0-8.0

Physiology and metabolism

oxygen tolerance

  • @ref: 25139
  • oxygen tolerance: aerobe

spore formation

  • @ref: 25139
  • spore description: rough-surfaced spores borne at the tip of a short sporophore
  • spore formation: yes

halophily

  • @ref: 25139
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 2 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2513915676allantoin-hydrolysis
2513962968cellulose-hydrolysis
2513917368hypoxanthine-hydrolysis
2513917895L-tyrosine-hydrolysis
2513917632nitrate-reduction
2513927922sorbose-carbon source
2513928017starch-hydrolysis
2513916199urea-hydrolysis
2513915318xanthine-hydrolysis
2513917151xylitol-carbon source
2513915963ribitol+carbon source
2513918305arbutin+hydrolysis
2513936218beta lactose+carbon source
25139casein+hydrolysis
2513917057cellobiose+carbon source
2513915824D-fructose+carbon source
2513916988D-ribose+carbon source
2513917924D-sorbitol+carbon source
2513965327D-xylose+carbon source
251394853esculin+hydrolysis
2513933984fucose+carbon source
2513928260galactose+carbon source
251395291gelatin+hydrolysis
2513917234glucose+carbon source
2513917268myo-inositol+carbon source
2513930849L-arabinose+carbon source
2513962345L-rhamnose+carbon source
2513917306maltose+carbon source
2513929864mannitol+carbon source
2513928053melibiose+carbon source
2513916634raffinose+carbon source
2513917992sucrose+carbon source
2513927082trehalose+carbon source
2513953426tween 80+hydrolysis
2513937166xylan+hydrolysis

enzymes

@refvalueactivityec
25139acid phosphatase+3.1.3.2
25139alkaline phosphatase+3.1.3.1
25139alpha-chymotrypsin+3.4.21.1
25139alpha-fucosidase-3.2.1.51
25139alpha-galactosidase+3.2.1.22
25139alpha-glucosidase+3.2.1.20
25139alpha-mannosidase+3.2.1.24
25139beta-galactosidase+3.2.1.23
25139beta-glucosidase+3.2.1.21
25139beta-glucuronidase-3.2.1.31
25139catalase+1.11.1.6
25139cystine arylamidase-3.4.11.3
25139cytochrome oxidase+1.9.3.1
25139esterase (C 4)+
25139esterase lipase (C 8)+
25139leucine arylamidase+3.4.11.1
25139lipase (C 14)-
25139N-acetyl-beta-glucosaminidase+3.2.1.52
25139naphthol-AS-BI-phosphohydrolase+
25139trypsin+3.4.21.4
25139valine arylamidase-

Isolation, sampling and environmental information

isolation

  • @ref: 25139
  • sample type: soil in the mangrove forest
  • geographic location: Ranong Province
  • country: Thailand
  • origin.country: THA
  • continent: Asia
  • isolation procedure: dilution plate technique

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Mangrove
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

Sequence information

16S sequences

  • @ref: 25139
  • description: Nonomuraea purpurea gene for 16S ribosomal RNA, partial sequence, strain: 1SM4-01
  • accession: LC148616
  • length: 1469
  • database: nuccore
  • NCBI tax ID: 1849276

GC content

  • @ref: 25139
  • GC-content: 70.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 25139

culture collection no.: BCC 60397, NBRC 109647

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27561257Nonomuraea purpurea sp. nov., an actinomycete isolated from mangrove sediment.Suksaard P, Mingma R, Srisuk N, Matsumoto A, Takahashi Y, Duangmal KInt J Syst Evol Microbiol10.1099/ijsem.0.0014572016Actinobacteria/*classification/genetics/isolation & purification, Avicennia/*microbiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistry, *WetlandsTranscriptome
Phylogeny28853687Nonomuraea stahlianthi sp. nov., an endophytic actinomycete isolated from the stem of Stahlianthus campanulatus.Niemhom N, Chutrakul C, Suriyachadkun C, Thawai CInt J Syst Evol Microbiol10.1099/ijsem.0.0020452017Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plant Stems/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistry, Zingiberaceae/*microbiologyTranscriptome
Phylogeny29767331Nonomuraea insulae sp. nov., isolated from forest soil.Saricaoglu S, Nouioui I, Ay H, Saygin H, Bektas KI, Guven K, Cetin D, Klenk HP, Isik K, Sahin NAntonie Van Leeuwenhoek10.1007/s10482-018-1097-62018Actinomycetales/classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Forests, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, TurkeyMetabolism

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25139P. M. Suksaard, R.,Srisuk, N.,Matsumoto, A.,Takahashi, Y.,Duangmal, K.Nonomuraea purpurea sp. nov., an actinomycete isolated from mangrove sediment10.1099/ijsem.0.001457IJSEM 66: 4987-4992 201627561257