General

@ref: 25018

BacDive-ID: 133231

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Pseudomonas turukhanskensis IB1.1 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from oil-contaminated soil.

NCBI tax id

• NCBI tax id: 1806536
• Matching level: species

doi: 10.13145/bacdive133231.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Gammaproteobacteria
• order: Pseudomonadales
• family: Pseudomonadaceae
• genus: Pseudomonas
• species: Pseudomonas turukhanskensis
• full scientific name: Pseudomonas turukhanskensis Korshunova et al. 2016

@ref: 25018

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas turukhanskensis

strain designation: IB1.1

type strain: yes

Morphology

cell morphology

• @ref: 25018
• gram stain: negative
• cell shape: rod-shaped
• motility: yes
• flagellum arrangement: polar

colony morphology

• @ref: 25018
• colony size: 2.5-3.3 mm
• colony color: beige
• colony shape: circular
• incubation period: 3 days
• medium used: nutrient agar

pigmentation

• @ref: 25018
• production: yes
• name: fluorescent pigment on King B medium

Culture and growth conditions

culture medium

• @ref: 25018
• name: Nutrient agar (NA)
• growth: yes

culture temp

• @ref: 25018
• growth: positive
• type: growth
• temperature: 0-34

culture pH

• @ref: 25018
• ability: positive
• type: growth
• pH: 6.0-8.0

Physiology and metabolism

oxygen tolerance

• @ref: 25018
• oxygen tolerance: aerobe

spore formation

• @ref: 25018
• spore formation: no

halophily

• @ref: 25018
• salt: NaCl
• growth: no
• tested relation: growth
• concentration: 5 %

metabolite utilization

metabolite production

• @ref: 25018
• Chebi-ID: 35581
• metabolite: indole
• production: no

metabolite tests

• @ref: 25018
• Chebi-ID: 35581
• metabolite: indole
• indole test: -

enzymes

Isolation, sampling and environmental information

isolation

• @ref: 25018
• sample type: oil-contaminated soil
• geographic location: Turukhansk District, East Siberia
• country: Russia
• origin.country: RUS
• continent: Asia

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_65195.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_64;98_2761;99_65195&stattab=map
• Last taxonomy: Pseudomonas
• 16S sequence: KP306892
• Sequence Identity:
• Total samples: 71
• soil counts: 18
• aquatic counts: 21
• animal counts: 14
• plant counts: 18

Sequence information

16S sequences

• @ref: 25018
• description: 16S rRNA
• accession: KP306892
• database: nuccore

GC content

• @ref: 25018
• GC-content: 58.5
• method: Thermal denaturation, fluorometry

External links

@ref: 25018

culture collection no.: VKM B-2935, CECT 9091

literature

• topic: Phylogeny
• Pubmed-ID: 27503709
• title: Pseudomonas turukhanskensis sp. nov., isolated from oil-contaminated soils.
• authors: Korshunova TY, Ramirez-Bahena MH, Chetverikov SP, Igual JM, Peix A, Loginov O
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijsem.0.001406
• year: 2016
• mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Petroleum Pollution, *Phylogeny, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, Siberia, *Soil Microbiology, Ubiquinone/chemistry
• topic2: Transcriptome

Reference