Strain identifier

BacDive ID: 133224

Type strain: Yes

Species: Litorisediminivivens gilvus

Strain Designation: YSM-17

NCBI tax ID(s): 1849019 (species)

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General

@ref: 25031

BacDive-ID: 133224

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, coccus-shaped, colony-forming

description: Litorisediminivivens gilvus YSM-17 is an aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from tidal flat sediment.

NCBI tax id

  • NCBI tax id: 1849019
  • Matching level: species

doi: 10.13145/bacdive133224.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Litorisediminivivens
  • species: Litorisediminivivens gilvus
  • full scientific name: Litorisediminivivens gilvus Park et al. 2016

@ref: 25031

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Litorisediminivivens

species: Litorisediminivivens gilvus

strain designation: YSM-17

type strain: yes

Morphology

cell morphology

@refgram staincell shapecell lengthcell widthmotility
25031negativecoccus-shaped
25031rod-shaped
25031ovoid-shaped0.5-3.5 µm0.3-0.8 µmno

colony morphology

  • @ref: 25031
  • colony size: 0.5-1.0 mm
  • colony color: pale yellow
  • colony shape: circular
  • incubation period: 5 days
  • medium used: MA

Culture and growth conditions

culture medium

  • @ref: 25031
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperature
25031positivegrowth10-35
25031positiveoptimum30
25031nogrowth4
25031nogrowth37

culture pH

@refabilitytypepH
25031positivegrowth5.5
25031positiveoptimum6.5-8.0
25031nogrowth5

Physiology and metabolism

oxygen tolerance

  • @ref: 25031
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
25031NaClpositivegrowth0.5-8.0 %(w/v)
25031NaCloptimum2.0-3.0 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2503129985L-glutamate-carbon source
2503129985L-glutamate-energy source
2503116150benzoate-carbon source
2503116150benzoate-energy source
25031casein-hydrolysis
2503165327D-xylose-carbon source
2503165327D-xylose-energy source
2503115740formate-carbon source
2503115740formate-energy source
250315291gelatin-hydrolysis
2503130849L-arabinose-carbon source
2503130849L-arabinose-energy source
2503115589L-malate-carbon source
2503115589L-malate-energy source
2503117306maltose-carbon source
2503117306maltose-energy source
2503117632nitrate-reduction
2503117814salicin-carbon source
2503117814salicin-energy source
2503128017starch-hydrolysis
2503130031succinate-carbon source
2503130031succinate-energy source
2503127082trehalose-carbon source
2503127082trehalose-energy source
2503153426tween 80-hydrolysis
2503116199urea-hydrolysis
2503130089acetate+carbon source
2503130089acetate+energy source
2503117057cellobiose+carbon source
2503117057cellobiose+energy source
2503116947citrate+carbon source
2503116947citrate+energy source
2503115824D-fructose+carbon source
2503115824D-fructose+energy source
2503112936D-galactose+carbon source
2503112936D-galactose+energy source
2503117634D-glucose+carbon source
2503117634D-glucose+energy source
2503116024D-mannose+carbon source
2503116024D-mannose+energy source
250314853esculin+hydrolysis
2503117368hypoxanthine+hydrolysis
2503117895L-tyrosine+hydrolysis
2503115361pyruvate+carbon source
2503115361pyruvate+energy source
2503117992sucrose+carbon source
2503117992sucrose+energy source
2503115318xanthine+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitive
2503128971ampicillinyesyes
250313393carbenicillinyesyes
25031124991cefalotinyesyes
2503117698chloramphenicolyesyes
250316104kanamycinyesyes
2503128368novobiocinyesyes
2503116869oleandomycinyesyes
2503118208penicillin gyesyes
2503117076streptomycinyesyes
250316472lincomycinyesno
2503117833gentamicinyesno
250317507neomycinyesyes
250318309polymyxin byesno
2503127902tetracyclineyesyes

enzymes

@refvalueactivityec
25031acid phosphatase-3.1.3.2
25031alkaline phosphatase+3.1.3.1
25031alpha-chymotrypsin-3.4.21.1
25031alpha-fucosidase-3.2.1.51
25031alpha-galactosidase-3.2.1.22
25031alpha-glucosidase+3.2.1.20
25031alpha-mannosidase-3.2.1.24
25031beta-galactosidase-3.2.1.23
25031beta-glucosidase-3.2.1.21
25031beta-glucuronidase-3.2.1.31
25031catalase+1.11.1.6
25031cystine arylamidase-3.4.11.3
25031cytochrome oxidase+1.9.3.1
25031esterase (C 4)+
25031esterase lipase (C 8)+
25031leucine arylamidase+3.4.11.1
25031lipase (C 14)-
25031N-acetyl-beta-glucosaminidase-3.2.1.52
25031naphthol-AS-BI-phosphohydrolase-
25031trypsin-3.4.21.4
25031valine arylamidase-

Isolation, sampling and environmental information

isolation

  • @ref: 25031
  • sample type: tidal flat sediment
  • geographic location: Yeosu on the South Sea
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia
  • enrichment culture: marine agar 2216 (MA; BD Difco)
  • enrichment culture temperature: 25
  • isolation procedure: standard dilution plating technique

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Tidal flat
#Environmental#Terrestrial#Sediment

Sequence information

16S sequences

  • @ref: 25031
  • description: Litorisediminivivens gilvus strain YSM-17 16S ribosomal RNA gene, partial sequence
  • accession: KX073750
  • length: 1390
  • database: nuccore
  • NCBI tax ID: 1849019

GC content

  • @ref: 25031
  • GC-content: 64.56-64.64
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 25031

culture collection no.: KCTC 52249, NBRC 112330

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25031S. H. Park, M. J.,Jung, Y. T.,Yoon, J. H.Litorisediminivivens gilvus gen. nov., sp. nov., isolated from a tidal flat10.1099/ijsem.0.001410IJSEM 66: 4681-4685 201627506824