Strain identifier

BacDive ID: 13321

Type strain: Yes

Species: Prauserella salsuginis

Strain history: CCTCC AA 208054 <-- S.-K. Tang; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 90694.

NCBI tax ID(s): 577680 (species)

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General

@ref: 16073

BacDive-ID: 13321

DSM-Number: 45267

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Prauserella salsuginis DSM 45267 is an aerobe, spore-forming, mesophilic bacterium that was isolated from salt lake.

NCBI tax id

  • NCBI tax id: 577680
  • Matching level: species

strain history

@refhistory
16073<- S.-K. Tang, YIM; YIM 90694
67770CCTCC AA 208054 <-- S.-K. Tang; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 90694.

doi: 10.13145/bacdive13321.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Prauserella
  • species: Prauserella salsuginis
  • full scientific name: Prauserella salsuginis Li et al. 2009

  • synonyms

    @refsynonym
    20215Prauserella sediminis
    20215Prauserella flava

@ref: 16073

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Prauserella

species: Prauserella sediminis

full scientific name: Prauserella sediminis Li et al. 2009

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidence
29336positiveno
69480no93.354
69480positive100

pigmentation

  • @ref: 29336
  • production: yes

multimedia

  • @ref: 16073
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45267.jpg
  • caption: Medium 1159 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 16073
  • name: GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1159
  • composition: Name: GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159) Composition: NaCl 100.0 g/l Agar 15.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16073positivegrowth28-37mesophilic
29336positivegrowth15-45
29336positiveoptimum32.5mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
29336positivegrowth06-09alkaliphile
29336positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 29336
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481yes97
69480yes99.069

halophily

@refsaltgrowthtested relationconcentration
29336NaClpositivegrowth05-20 %
29336NaClpositiveoptimum10 %

observation

@refobservation
29336aggregates in clumps
67770quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2933616449alanine+carbon source
2933629016arginine+carbon source
2933617234glucose+carbon source
2933627570histidine+carbon source
2933617716lactose+carbon source
2933628044phenylalanine+carbon source
2933626271proline+carbon source
2933626546rhamnose+carbon source
2933626986threonine+carbon source
2933616296D-tryptophan+carbon source

enzymes

@refvalueactivityec
29336catalase+1.11.1.6
29336gelatinase+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16073salt lakeXinjiang Province, Aiding LakeChinaCHNAsia
67770Water from Aiding Lake, a salt lakeXinjiang Province, north-west ChinaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_41937.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_3364;97_4129;98_30482;99_41937&stattab=map
  • Last taxonomy: Prauserella
  • 16S sequence: FJ444995
  • Sequence Identity:
  • Total samples: 322
  • soil counts: 41
  • aquatic counts: 15
  • animal counts: 255
  • plant counts: 11

Safety information

risk assessment

  • @ref: 16073
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16073
  • description: Prauserella sediminis strain YIM 90694 16S ribosomal RNA gene, partial sequence
  • accession: FJ444995
  • length: 1456
  • database: ena
  • NCBI tax ID: 577680

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Prauserella sediminis DSM 45267GCA_014195435contigncbi577680
66792Prauserella sediminis strain DSM 45267577680.3wgspatric577680
66792Prauserella sediminis DSM 452672827231811draftimg577680

GC content

@refGC-contentmethod
1607369.1high performance liquid chromatography (HPLC)
2933669.1

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes97no
gram-positiveyes88.331no
anaerobicno98.881yes
halophileyes85.324yes
spore-formingyes66.665no
glucose-utilyes90.262yes
thermophileno95.364no
motileno91.328yes
flagellatedno97.624yes
aerobicyes94.159yes
glucose-fermentno92.345no

External links

@ref: 16073

culture collection no.: DSM 45267, CCTCC AA 208054, YIM 90694, JCM 33235

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19628605Prauserella salsuginis sp. nov., Prauserella flava sp. nov., Prauserella aidingensis sp. nov. and Prauserella sediminis sp. nov., isolated from a salt lake.Li Y, Tang SK, Chen YG, Wu JY, Zhi XY, Zhang YQ, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.011122-02009Actinomycetales/*classification/genetics/*isolation & purification/metabolism, Base Composition, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fresh Water/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/*metabolismMetabolism
Phylogeny25713039Prauserella isguenensis sp. nov., a halophilic actinomycete isolated from desert soil.Saker R, Bouras N, Meklat A, Zitouni A, Schumann P, Sproer C, Sabaou N, Klenk HPInt J Syst Evol Microbiol10.1099/ijs.0.0001452015Actinomycetales/*classification/genetics/isolation & purification, Algeria, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16073Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45267)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45267
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29336Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2574828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1