Strain identifier

BacDive ID: 133193

Type strain: Yes

Species: Sphingobacterium jejuense

Strain Designation: GJ30-7

Strain history: W.-T. Im; Hankyong Natl. Univ., South Korea; GJ30-7.

NCBI tax ID(s): 1813877 (species)

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General

@ref: 24989

BacDive-ID: 133193

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Sphingobacterium jejuense GJ30-7 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from compost.

NCBI tax id

  • NCBI tax id: 1813877
  • Matching level: species

strain history

  • @ref: 67770
  • history: W.-T. Im; Hankyong Natl. Univ., South Korea; GJ30-7.

doi: 10.13145/bacdive133193.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Sphingobacteriia
  • order: Sphingobacteriales
  • family: Sphingobacteriaceae
  • genus: Sphingobacterium
  • species: Sphingobacterium jejuense
  • full scientific name: Sphingobacterium jejuense Siddiqi et al. 2016

@ref: 24989

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Sphingobacteriales

family: Sphingobacteriaceae

genus: Sphingobacterium

species: Sphingobacterium jejuense

strain designation: GJ30-7

type strain: yes

Morphology

cell morphology

  • @ref: 24989
  • gram stain: negative
  • cell length: 1.5-3.0 µm
  • cell width: 0.3-0.7 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 24989
  • colony size: 0.5-1.5 mm
  • colony color: light yellow
  • colony shape: circular
  • medium used: R2A agar (Reasoner's 2A agar)

Culture and growth conditions

culture medium

  • @ref: 24989
  • name: Reasoner's 2A agar (R2A)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
24989positiveoptimum30mesophilic
24989positivegrowth20.0-40.0
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
24989positiveoptimum7
24989positivegrowth5.5-8.5alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 24989
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 24989
  • spore formation: no

halophily

@refsalttested relationconcentrationgrowth
24989NaCloptimum0 %
24989NaClgrowth0.5-1.5 %(w/v)positive

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
24989370543-hydroxybutyrate-assimilation
24989178794-hydroxybenzoate-assimilation
24989581435-dehydro-D-gluconate-assimilation
2498917128adipate-assimilation
2498985146carboxymethylcellulose-hydrolysis
24989casein-hydrolysis
2498916899D-mannitol-assimilation
2498916988D-ribose-assimilation
2498917992sucrose-assimilation
2498927689decanoate-assimilation
2498930849L-arabinose-assimilation
2498918287L-fucose-assimilation
2498915971L-histidine-assimilation
2498962345L-rhamnose-assimilation
2498924996lactate-assimilation
2498925115malate-assimilation
2498918401phenylacetate-assimilation
2498932032potassium gluconate-assimilation
2498932954sodium acetate-assimilation
2498953258sodium citrate-assimilation
2498928017starch-hydrolysis
2498917634D-glucose+assimilation
2498917306maltose+assimilation
2498916024D-mannose+assimilation
2498928053melibiose+assimilation
249894853esculin+hydrolysis
2498928087glycogen+assimilation
24989L-proline-4-nitroanilide+assimilation
24989506227N-acetylglucosamine+assimilation
2498917814salicin+assimilation

enzymes

@refvalueactivityec
24989acid phosphatase+3.1.3.2
24989alkaline phosphatase+3.1.3.1
24989alpha-chymotrypsin-3.4.21.1
24989alpha-fucosidase-3.2.1.51
24989alpha-galactosidase+3.2.1.22
24989alpha-glucosidase+3.2.1.20
24989alpha-mannosidase+3.2.1.24
24989beta-galactosidase+3.2.1.23
24989beta-glucosidase+3.2.1.21
24989beta-glucuronidase+3.2.1.31
24989catalase+1.11.1.6
24989cystine arylamidase+3.4.11.3
24989cytochrome oxidase+1.9.3.1
24989esterase+
24989esterase Lipase (C 8)+
24989leucine arylamidase+3.4.11.1
24989naphthol-AS-BI-phosphohydrolase+
24989trypsin+3.4.21.4
24989urease-3.5.1.5
24989valine arylamidase-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture durationenrichment culture temperature
24989compostJeju islandRepublic of KoreaKORAsiaR2A agar (Reasoner's 2A agar,Difco)5 days23.0--25.0
67770Compost

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Biodegradation
  • Cat3: #Composting

taxonmaps

  • @ref: 69479
  • File name: preview.99_71838.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15366;96_26517;97_37416;98_50359;99_71838&stattab=map
  • Last taxonomy: Sphingobacterium jejuense subclade
  • 16S sequence: KT950743
  • Sequence Identity:
  • Total samples: 497
  • soil counts: 101
  • aquatic counts: 80
  • animal counts: 297
  • plant counts: 19

Sequence information

16S sequences

  • @ref: 24989
  • description: Sphingobacterium sp. GJ30-7 16S ribosomal RNA gene, partial sequence
  • accession: KT950743
  • length: 1452
  • database: nuccore
  • NCBI tax ID: 1813877

GC content

  • @ref: 24989
  • GC-content: 43
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 24989

culture collection no.: KACC 18625, JCM 30948

literature

  • topic: Phylogeny
  • Pubmed-ID: 27498829
  • title: Sphingobacterium jejuense sp. nov., with ginsenoside-converting activity, isolated from compost.
  • authors: Siddiqi MZ, Muhammad Shafi S, Choi KD, Im WT, Aslam Z
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001370
  • year: 2016
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ginsenosides/*metabolism, Panax/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Sphingobacterium/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24989M. Z. M. S. Siddiqi, Siddiqi,Choi, Kang Duk,Im, Wan-Taek,Aslam, ZubairSphingobacterium jejuense sp. nov., with ginsenoside-converting activity, isolated from compost10.1099/ijsem.0.001370IJSEM 66: 4433-4439 201627498829
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/