Strain identifier
BacDive ID: 13319
Type strain:
Species: Prauserella salsuginis
Strain history: CCTCC AA 208052 <-- S.-K. Tang; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 90630.
NCBI tax ID(s): 577679 (species)
General
@ref: 16071
BacDive-ID: 13319
DSM-Number: 45265
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Prauserella salsuginis DSM 45265 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from salt lake.
NCBI tax id
- NCBI tax id: 577679
- Matching level: species
strain history
@ref | history |
---|---|
16071 | <- S.-K. Tang, YIM; YIM 90630 |
67770 | CCTCC AA 208052 <-- S.-K. Tang; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 90630. |
doi: 10.13145/bacdive13319.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Prauserella
- species: Prauserella salsuginis
- full scientific name: Prauserella salsuginis Li et al. 2009
synonyms
@ref synonym 20215 Prauserella sediminis 20215 Prauserella flava
@ref: 16071
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Prauserella
species: Prauserella salsuginis
full scientific name: Prauserella salsuginis Li et al. 2009
type strain: no
Morphology
cell morphology
- @ref: 29336
- gram stain: positive
- motility: no
pigmentation
- @ref: 29336
- production: yes
Culture and growth conditions
culture medium
- @ref: 16071
- name: GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1159
- composition: Name: GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159) Composition: NaCl 100.0 g/l Agar 15.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16071 | positive | growth | 37 | mesophilic |
29336 | positive | growth | 15-45 | |
29336 | positive | optimum | 32.5 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
29336 | positive | growth | 06-09 | alkaliphile |
29336 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 29336
- oxygen tolerance: aerobe
spore formation
- @ref: 29336
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
29336 | NaCl | positive | growth | 05-15 % |
29336 | NaCl | positive | optimum | 9 % |
observation
@ref | observation |
---|---|
29336 | aggregates in clumps |
67770 | quinones: MK-9(H4) |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29336 | 16449 | alanine | + | carbon source |
29336 | 28757 | fructose | + | carbon source |
29336 | 17234 | glucose | + | carbon source |
29336 | 27570 | histidine | + | carbon source |
29336 | 17716 | lactose | + | carbon source |
29336 | 28044 | phenylalanine | + | carbon source |
29336 | 26271 | proline | + | carbon source |
29336 | 33942 | ribose | + | carbon source |
29336 | 26986 | threonine | + | carbon source |
29336 | 16296 | D-tryptophan | + | carbon source |
29336 | 18222 | xylose | + | carbon source |
enzymes
- @ref: 29336
- value: gelatinase
- activity: +
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
16071 | salt lake | Xinjiang Province, Aiding Lake | China | CHN | Asia |
67770 | Water from Aiding Lake, a salt lake | Xinjiang Province, north-west China | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Lake (large) |
#Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_41937.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_3364;97_4129;98_30482;99_41937&stattab=map
- Last taxonomy: Prauserella
- 16S sequence: FJ444993
- Sequence Identity:
- Total samples: 322
- soil counts: 41
- aquatic counts: 15
- animal counts: 255
- plant counts: 11
Safety information
risk assessment
- @ref: 16071
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16071
- description: Prauserella flava strain YIM 90630 16S ribosomal RNA gene, partial sequence
- accession: FJ444993
- length: 1457
- database: ena
- NCBI tax ID: 577679
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Prauserella flava DSM 45265 | 2596583604 | draft | img | 577679 |
66792 | Prauserella flava DSM 45265 | GCA_024648865 | scaffold | ncbi | 577679 |
GC content
@ref | GC-content | method |
---|---|---|
16071 | 69.9 | high performance liquid chromatography (HPLC) |
29336 | 69.9 |
External links
@ref: 16071
culture collection no.: DSM 45265, CCTCC AA 208052, YIM 90630, JCM 33233
straininfo link
- @ref: 82520
- straininfo: 396828
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19628605 | Prauserella salsuginis sp. nov., Prauserella flava sp. nov., Prauserella aidingensis sp. nov. and Prauserella sediminis sp. nov., isolated from a salt lake. | Li Y, Tang SK, Chen YG, Wu JY, Zhi XY, Zhang YQ, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.011122-0 | 2009 | Actinomycetales/*classification/genetics/*isolation & purification/metabolism, Base Composition, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fresh Water/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/*metabolism | Metabolism |
Phylogeny | 25013227 | Prauserella coralliicola sp. nov., isolated from the coral Galaxea fascicularis. | Wu JF, Li J, You ZQ, Zhang S | Int J Syst Evol Microbiol | 10.1099/ijs.0.062679-0 | 2014 | Actinomycetales/*classification/genetics/isolation & purification, Animals, Anthozoa/*microbiology, Bacterial Typing Techniques, Base Composition, China, Coral Reefs, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Phylogeny | 25713039 | Prauserella isguenensis sp. nov., a halophilic actinomycete isolated from desert soil. | Saker R, Bouras N, Meklat A, Zitouni A, Schumann P, Sproer C, Sabaou N, Klenk HP | Int J Syst Evol Microbiol | 10.1099/ijs.0.000145 | 2015 | Actinomycetales/*classification/genetics/isolation & purification, Algeria, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
16071 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45265) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45265 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
29336 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25748 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
82520 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID396828.1 | StrainInfo: A central database for resolving microbial strain identifiers |