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Strain identifier

BacDive ID: 133185

Type strain: Yes

Species: Mycobacterium helvum

Strain Designation: DL739

Strain history: J. L. Dahl; Univ. of Minnesota Duluth, USA; DL739.

NCBI tax ID(s): 1534349 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24967

BacDive-ID: 133185

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Mycobacterium helvum DL739 is a mesophilic bacterium that was isolated from Water sample from Sarracenia purpurea pitchers at the Laurentian Educational Center.

NCBI tax id

  • NCBI tax id: 1534349
  • Matching level: species

strain history: J. L. Dahl; Univ. of Minnesota Duluth, USA; DL739.

doi: 10.13145/bacdive133185.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium helvum
  • full scientific name: Mycobacterium helvum Tran and Dahl 2016
  • synonyms

    • @ref: 20215
    • synonym: Mycolicibacterium helvum

@ref: 24967

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium helvum

strain designation: DL739

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 93.253

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 96.825

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 97.402

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Water sample from Sarracenia purpurea pitchers at the Laurentian Educational Center
  • host species: Sarracenia purpurea
  • geographic location: MN
  • country: USA
  • origin.country: USA
  • continent: North America

Sequence information

16S sequences

  • @ref: 67770
  • description: Mycobacterium helvum strain JCM 30396 16S ribosomal RNA gene, partial sequence
  • accession: KM216314
  • length: 1459
  • database: ena
  • NCBI tax ID: 1534349

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycolicibacterium helvum JCM 30396GCA_010731895completencbi1534349
66792Mycolicibacterium helvum strain JCM 303961534349.5completepatric1534349
66792Mycolicibacterium helvum JCM 303962888226484completeimg1534349
66792Alphaproteobacteria bacterium maxbin2.0024GCA_003820255contigpatric1913988

External links

@ref: 24967

culture collection no.: JCM 30396, NCCB 100520

literature

  • topic: Phylogeny
  • Pubmed-ID: 27498537
  • title: Mycobacterium sarraceniae sp. nov. and Mycobacterium helvum sp. nov., isolated from the pitcher plant Sarracenia purpurea.
  • authors: Tran PM, Dahl JL
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001377
  • year: 2016
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Minnesota, Mycobacterium/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sarraceniaceae/*microbiology, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24967P. M. D. Tran, John L.Mycobacterium sarraceniae sp. nov. and Mycobacterium helvum sp. nov., isolated from the pitcher plant Sarracenia purpurea10.1099/ijsem.0.001377IJSEM 66: 4480-4485 201627498537
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes