Strain identifier
BacDive ID: 133185
Type strain:
Species: Mycobacterium helvum
Strain Designation: DL739
Strain history: J. L. Dahl; Univ. of Minnesota Duluth, USA; DL739.
NCBI tax ID(s): 1534349 (species)
General
@ref: 24967
BacDive-ID: 133185
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mycobacterium helvum DL739 is a mesophilic bacterium that was isolated from Water sample from Sarracenia purpurea pitchers at the Laurentian Educational Center.
NCBI tax id
- NCBI tax id: 1534349
- Matching level: species
strain history
- @ref: 67770
- history: J. L. Dahl; Univ. of Minnesota Duluth, USA; DL739.
doi: 10.13145/bacdive133185.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium helvum
- full scientific name: Mycobacterium helvum Tran and Dahl 2016
synonyms
- @ref: 20215
- synonym: Mycolicibacterium helvum
@ref: 24967
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium helvum
strain designation: DL739
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 93.347 | |
69480 | 100 | positive |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 90 |
69480 | no | 99.977 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Water sample from Sarracenia purpurea pitchers at the Laurentian Educational Center
- host species: Sarracenia purpurea
- geographic location: MN
- country: USA
- origin.country: USA
- continent: North America
Sequence information
16S sequences
- @ref: 67770
- description: Mycobacterium helvum strain JCM 30396 16S ribosomal RNA gene, partial sequence
- accession: KM216314
- length: 1459
- database: ena
- NCBI tax ID: 1534349
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mycolicibacterium helvum JCM 30396 | GCA_010731895 | complete | ncbi | 1534349 |
66792 | Mycolicibacterium helvum strain JCM 30396 | 1534349.5 | complete | patric | 1534349 |
66792 | Mycolicibacterium helvum JCM 30396 | 2888226484 | complete | img | 1534349 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 90 | no |
motile | no | 93.925 | no |
flagellated | no | 98.605 | no |
gram-positive | yes | 88.085 | no |
anaerobic | no | 99.263 | no |
aerobic | yes | 90.48 | no |
halophile | no | 93.862 | no |
spore-forming | no | 87.809 | no |
glucose-util | yes | 83.036 | no |
thermophile | no | 99.348 | yes |
glucose-ferment | no | 88.181 | no |
External links
@ref: 24967
culture collection no.: JCM 30396, NCCB 100520
literature
- topic: Phylogeny
- Pubmed-ID: 27498537
- title: Mycobacterium sarraceniae sp. nov. and Mycobacterium helvum sp. nov., isolated from the pitcher plant Sarracenia purpurea.
- authors: Tran PM, Dahl JL
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.001377
- year: 2016
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Minnesota, Mycobacterium/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sarraceniaceae/*microbiology, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
24967 | P. M. D. Tran, John L. | Mycobacterium sarraceniae sp. nov. and Mycobacterium helvum sp. nov., isolated from the pitcher plant Sarracenia purpurea | 10.1099/ijsem.0.001377 | IJSEM 66: 4480-4485 2016 | 27498537 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |