Strain identifier

BacDive ID: 133184

Type strain: Yes

Species: Mycobacterium sarraceniae

Strain Designation: DL734

Strain history: J. L. Dahl; Univ. of Minnesota Duluth, USA; DL734.

NCBI tax ID(s): 1534348 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24967

BacDive-ID: 133184

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Mycobacterium sarraceniae DL734 is a mesophilic bacterium that was isolated from water samples collected from S. purpurea pitchers.

NCBI tax id

  • NCBI tax id: 1534348
  • Matching level: species

strain history

  • @ref: 67770
  • history: J. L. Dahl; Univ. of Minnesota Duluth, USA; DL734.

doi: 10.13145/bacdive133184.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium sarraceniae
  • full scientific name: Mycobacterium sarraceniae Tran and Dahl 2016
  • synonyms

    • @ref: 20215
    • synonym: Mycolicibacterium sarraceniae

@ref: 24967

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium sarraceniae

strain designation: DL734

type strain: yes

Morphology

cell morphology

@refcell shapemotilityconfidencegram stain
24967
24967coccus-shaped
69480no92.083
69480100positive

colony morphology

@refcolony colorincubation periodmedium used
24967orange7-10 daysMiddlebrook 7H11 agar withOADC reaches maturity
24967yellow5-7 daysMiddlebrook 7H11 agar withOADC reaches maturity
24967orange7-10 daysMiddlebrook 7H11 with OADC reaches maturity
24967pale yellow5-7 daysMiddlebrook 7H11 agar with OADC reaches maturity

Culture and growth conditions

culture medium

@refnamegrowth
24967Middlebrook 7H11yes
24967Middlebrook 7H11 agar withOADC reaches maturityyes
24967Middlebrook 7H11 with OADC reaches maturityyes
24967Middlebrook 7H11 agar with OADC reaches maturityyes

culture temp

@refgrowthtypetemperaturerange
24967positivegrowth28-32mesophilic
24967nogrowth37mesophilic
24967positivegrowth28-37mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no94
69480no99.986

halophily

@refsaltgrowthtested relationconcentration
24967NaClpositivegrowth5 %
24967NaClpositivegrowth5 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2496717632nitrate-reduction
2496775248potassium tellurite-reduction
2496753426tween 80-hydrolysis
2496717632nitrate+reduction
2496775248potassium tellurite+reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitiveis resistant
249677507neomycinyesyes
2496727902tetracyclineyesyes
2496728971ampicillinyesyes
2496717334penicillinyesyes
2496717698chloramphenicolyesyes
24967100241ciprofloxacinyesyes
2496717076streptomycinyesyes
2496717334penicillinyesyes
24967161680aztreonamyesyes
2496745924trimethoprimyesyes

enzymes

@refvalueactivityec
24967catalase-1.11.1.6
24967urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinenthost species
24967water samples collected from S. purpurea pitchersRepose Lake in northern MinnesotaUSAUSANorth America
67770Water sample from Sarracenia purpurea pitchers at Repose LakeMNUSAUSANorth AmericaSarracenia purpurea

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic
#Host#Plants#Herbaceous plants (Grass,Crops)

Sequence information

16S sequences

  • @ref: 24967
  • description: 16S rRNA
  • accession: KM216315
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycolicibacterium sarraceniae JCM 30395GCA_010731875completencbi1534348
66792Mycolicibacterium sarraceniae strain JCM 303951534348.5completepatric1534348
66792Mycolicibacterium sarraceniae JCM 303952888238920completeimg1534348

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno94no
motileno95.206no
flagellatedno98.512no
gram-positiveyes88.835no
anaerobicno99.313no
aerobicyes88.864no
halophileno92.412no
spore-formingno87.431no
glucose-utilyes79.434no
thermophileno99.401yes
glucose-fermentno90.394no

External links

@ref: 24967

culture collection no.: JCM 30395, NCCB 100519

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27498537Mycobacterium sarraceniae sp. nov. and Mycobacterium helvum sp. nov., isolated from the pitcher plant Sarracenia purpurea.Tran PM, Dahl JLInt J Syst Evol Microbiol10.1099/ijsem.0.0013772016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Minnesota, Mycobacterium/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sarraceniaceae/*microbiology, Sequence Analysis, DNATranscriptome
Phylogeny34878372Mycolicibacterium baixiangningiae sp. nov. and Mycolicibacterium mengxianglii sp. nov., two new rapidly growing mycobacterial species.Cheng Y, Lei W, Wang X, Tian Z, Liu H, Yang J, Lu S, Lai XH, Pu J, Huang Y, Zhang S, Yang C, Lian X, Bai Y, Wan K, Wang S, Xu JInt J Syst Evol Microbiol10.1099/ijsem.0.0050192021Animals, Antelopes/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Feces/microbiology, Mycobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, TibetTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24967P. M. D. Tran, John L.Mycobacterium sarraceniae sp. nov. and Mycobacterium helvum sp. nov., isolated from the pitcher plant Sarracenia purpurea10.1099/ijsem.0.001377IJSEM 66: 4480-4485 201627498537
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1