Strain identifier
BacDive ID: 133184
Type strain:
Species: Mycobacterium sarraceniae
Strain Designation: DL734
Strain history: J. L. Dahl; Univ. of Minnesota Duluth, USA; DL734.
NCBI tax ID(s): 1534348 (species)
version 8.1 (current version)
General
@ref: 24967
BacDive-ID: 133184
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mycobacterium sarraceniae DL734 is a mesophilic bacterium that was isolated from water samples collected from S. purpurea pitchers.
NCBI tax id
- NCBI tax id: 1534348
- Matching level: species
strain history
- @ref: 67770
- history: J. L. Dahl; Univ. of Minnesota Duluth, USA; DL734.
doi: 10.13145/bacdive133184.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium sarraceniae
- full scientific name: Mycobacterium sarraceniae Tran and Dahl 2016
synonyms
- @ref: 20215
- synonym: Mycolicibacterium sarraceniae
@ref: 24967
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium sarraceniae
strain designation: DL734
type strain: yes
Morphology
cell morphology
@ref | cell shape | motility | confidence | gram stain |
---|---|---|---|---|
24967 | ||||
24967 | coccus-shaped | |||
69480 | no | 92.083 | ||
69480 | 100 | positive |
colony morphology
@ref | colony color | incubation period | medium used |
---|---|---|---|
24967 | orange | 7-10 days | Middlebrook 7H11 agar withOADC reaches maturity |
24967 | yellow | 5-7 days | Middlebrook 7H11 agar withOADC reaches maturity |
24967 | orange | 7-10 days | Middlebrook 7H11 with OADC reaches maturity |
24967 | pale yellow | 5-7 days | Middlebrook 7H11 agar with OADC reaches maturity |
Culture and growth conditions
culture medium
@ref | name | growth |
---|---|---|
24967 | Middlebrook 7H11 | yes |
24967 | Middlebrook 7H11 agar withOADC reaches maturity | yes |
24967 | Middlebrook 7H11 with OADC reaches maturity | yes |
24967 | Middlebrook 7H11 agar with OADC reaches maturity | yes |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
24967 | positive | growth | 28-32 | mesophilic |
24967 | no | growth | 37 | mesophilic |
24967 | positive | growth | 28-37 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 94 |
69480 | no | 99.986 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
24967 | NaCl | positive | growth | 5 % |
24967 | NaCl | positive | growth | 5 %(w/v) |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
24967 | 17632 | nitrate | - | reduction |
24967 | 75248 | potassium tellurite | - | reduction |
24967 | 53426 | tween 80 | - | hydrolysis |
24967 | 17632 | nitrate | + | reduction |
24967 | 75248 | potassium tellurite | + | reduction |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is sensitive | is resistant |
---|---|---|---|---|---|
24967 | 7507 | neomycin | yes | yes | |
24967 | 27902 | tetracycline | yes | yes | |
24967 | 28971 | ampicillin | yes | yes | |
24967 | 17334 | penicillin | yes | yes | |
24967 | 17698 | chloramphenicol | yes | yes | |
24967 | 100241 | ciprofloxacin | yes | yes | |
24967 | 17076 | streptomycin | yes | yes | |
24967 | 17334 | penicillin | yes | yes | |
24967 | 161680 | aztreonam | yes | yes | |
24967 | 45924 | trimethoprim | yes | yes |
enzymes
@ref | value | activity | ec |
---|---|---|---|
24967 | catalase | - | 1.11.1.6 |
24967 | urease | - | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | host species |
---|---|---|---|---|---|---|
24967 | water samples collected from S. purpurea pitchers | Repose Lake in northern Minnesota | USA | USA | North America | |
67770 | Water sample from Sarracenia purpurea pitchers at Repose Lake | MN | USA | USA | North America | Sarracenia purpurea |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | |
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
Sequence information
16S sequences
- @ref: 24967
- description: 16S rRNA
- accession: KM216315
- database: nuccore
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mycolicibacterium sarraceniae JCM 30395 | GCA_010731875 | complete | ncbi | 1534348 |
66792 | Mycolicibacterium sarraceniae strain JCM 30395 | 1534348.5 | complete | patric | 1534348 |
66792 | Mycolicibacterium sarraceniae JCM 30395 | 2888238920 | complete | img | 1534348 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 94 | no |
motile | no | 95.206 | no |
flagellated | no | 98.512 | no |
gram-positive | yes | 88.835 | no |
anaerobic | no | 99.313 | no |
aerobic | yes | 88.864 | no |
halophile | no | 92.412 | no |
spore-forming | no | 87.431 | no |
glucose-util | yes | 79.434 | no |
thermophile | no | 99.401 | yes |
glucose-ferment | no | 90.394 | no |
External links
@ref: 24967
culture collection no.: JCM 30395, NCCB 100519
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 27498537 | Mycobacterium sarraceniae sp. nov. and Mycobacterium helvum sp. nov., isolated from the pitcher plant Sarracenia purpurea. | Tran PM, Dahl JL | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001377 | 2016 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Minnesota, Mycobacterium/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sarraceniaceae/*microbiology, Sequence Analysis, DNA | Transcriptome |
Phylogeny | 34878372 | Mycolicibacterium baixiangningiae sp. nov. and Mycolicibacterium mengxianglii sp. nov., two new rapidly growing mycobacterial species. | Cheng Y, Lei W, Wang X, Tian Z, Liu H, Yang J, Lu S, Lai XH, Pu J, Huang Y, Zhang S, Yang C, Lian X, Bai Y, Wan K, Wang S, Xu J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005019 | 2021 | Animals, Antelopes/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Feces/microbiology, Mycobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tibet | Transcriptome |
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
24967 | P. M. D. Tran, John L. | Mycobacterium sarraceniae sp. nov. and Mycobacterium helvum sp. nov., isolated from the pitcher plant Sarracenia purpurea | 10.1099/ijsem.0.001377 | IJSEM 66: 4480-4485 2016 | 27498537 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |