Strain identifier

BacDive ID: 13318

Type strain: Yes

Species: Prauserella salsuginis

Strain history: CCTCC AA 208051 <-- S.-K. Tang; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 90625.

NCBI tax ID(s): 387889 (species)

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General

@ref: 15861

BacDive-ID: 13318

DSM-Number: 45264

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Prauserella salsuginis DSM 45264 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from salt lake.

NCBI tax id

  • NCBI tax id: 387889
  • Matching level: species

strain history

@refhistory
15861<- S.-K. Tang, YIM; YIM 90625
67770CCTCC AA 208051 <-- S.-K. Tang; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 90625.

doi: 10.13145/bacdive13318.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Prauserella
  • species: Prauserella salsuginis
  • full scientific name: Prauserella salsuginis Li et al. 2009

  • synonyms

    @refsynonym
    20215Prauserella sediminis
    20215Prauserella flava

@ref: 15861

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Prauserella

species: Prauserella salsuginis

full scientific name: Prauserella salsuginis Li et al. 2009

type strain: yes

Morphology

cell morphology

  • @ref: 29336
  • gram stain: positive
  • motility: no

pigmentation

  • @ref: 29336
  • production: yes

multimedia

  • @ref: 15861
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45264.jpg
  • caption: Medium 1261 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15861ISP 2 MEDIUM WITH 10% NACL (DSMZ Medium 1261)yeshttps://mediadive.dsmz.de/medium/1261Name: ISP 2 MEDIUM WITH 10% NACL (DSMZ Medium 1261) Composition: NaCl 100.0 g/l Agar 20.0 g/l Malt extract 10.0 g/l Glucose 4.0 g/l Yeast extract 4.0 g/l Distilled water
15861GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159)yeshttps://mediadive.dsmz.de/medium/1159Name: GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159) Composition: NaCl 100.0 g/l Agar 15.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15861positivegrowth37mesophilic
29336positivegrowth15-45
29336positiveoptimum32.5mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
29336positivegrowth06-09alkaliphile
29336positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 29336
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
29336NaClpositivegrowth05-15 %
29336NaClpositiveoptimum9 %

observation

@refobservation
29336aggregates in clumps
67770quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2933616449alanine+carbon source
2933622599arabinose+carbon source
2933617057cellobiose+carbon source
2933628757fructose+carbon source
2933628260galactose+carbon source
293365291gelatin+carbon source
2933617234glucose+carbon source
2933627570histidine+carbon source
2933617716lactose+carbon source
2933629864mannitol+carbon source
2933637684mannose+carbon source
2933617268myo-inositol+carbon source
2933628044phenylalanine+carbon source
2933626271proline+carbon source
2933626546rhamnose+carbon source
2933633942ribose+carbon source
2933626986threonine+carbon source
2933627082trehalose+carbon source
2933616296D-tryptophan+carbon source
2933617151xylitol+carbon source
2933618222xylose+carbon source

enzymes

@refvalueactivityec
29336catalase+1.11.1.6
29336gelatinase+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
15861salt lakeXinjiang Province, Aiding LakeChinaCHNAsia
67770Water from Aiding Lake, a salt lakeXinjiang Province, north-west ChinaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_41937.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_3364;97_4129;98_30482;99_41937&stattab=map
  • Last taxonomy: Prauserella
  • 16S sequence: FJ444992
  • Sequence Identity:
  • Total samples: 322
  • soil counts: 41
  • aquatic counts: 15
  • animal counts: 255
  • plant counts: 11

Safety information

risk assessment

  • @ref: 15861
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Prauserella sp. YIM 90625 16S ribosomal RNA gene, partial sequenceDQ656334750ena387889
15861Prauserella salsuginis strain YIM 90625 16S ribosomal RNA gene, partial sequenceFJ4449921430ena387889

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Prauserella salsuginis DSM 452642596583569draftimg387889
66792Prauserella salsuginis DSM 45264GCA_024648885contigncbi387889

GC content

@refGC-contentmethod
1586169.1high performance liquid chromatography (HPLC)
2933669.1

External links

@ref: 15861

culture collection no.: DSM 45264, CCTCC AA 208051, YIM 90625, JCM 33232

straininfo link

  • @ref: 82519
  • straininfo: 397568

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19628605Prauserella salsuginis sp. nov., Prauserella flava sp. nov., Prauserella aidingensis sp. nov. and Prauserella sediminis sp. nov., isolated from a salt lake.Li Y, Tang SK, Chen YG, Wu JY, Zhi XY, Zhang YQ, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.011122-02009Actinomycetales/*classification/genetics/*isolation & purification/metabolism, Base Composition, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fresh Water/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/*metabolismMetabolism
Phylogeny25713039Prauserella isguenensis sp. nov., a halophilic actinomycete isolated from desert soil.Saker R, Bouras N, Meklat A, Zitouni A, Schumann P, Sproer C, Sabaou N, Klenk HPInt J Syst Evol Microbiol10.1099/ijs.0.0001452015Actinomycetales/*classification/genetics/isolation & purification, Algeria, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
15861Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45264)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45264
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
29336Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604125748
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82519Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID397568.1StrainInfo: A central database for resolving microbial strain identifiers