Strain identifier
version 8.1 (current version)
General
@ref: 24953
BacDive-ID: 133176
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped, colony-forming, pigmented
description: Rhizobium altiplani BR 10423 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and has a yellow pigmentation.
NCBI tax id
- NCBI tax id: 1864509
- Matching level: species
doi: 10.13145/bacdive133176.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Rhizobium
- species: Rhizobium altiplani
- full scientific name: Rhizobium altiplani Baraúna et al. 2016
@ref: 24953
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium altiplani
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | flagellum arrangement | confidence |
---|---|---|---|---|---|---|---|
24953 | negative | 1.5 µm | 0.4 µm | rod-shaped | yes | polar | |
69480 | negative | 99.997 |
colony morphology
- @ref: 24953
- colony size: 3 mm
- colony shape: circular
- incubation period: 4 days
- medium used: YMA medium
pigmentation
- @ref: 24953
- production: yes
- color: yellow
Culture and growth conditions
culture medium
- @ref: 24953
- name: YMA medium
- growth: yes
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
24953 | positive | growth | 12-35 | |
24953 | positive | optimum | 28-30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
24953 | positive | growth | 6.8-10.0 | alkaliphile |
24953 | positive | optimum | 6.8-7.0 |
Physiology and metabolism
oxygen tolerance
- @ref: 24953
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
24953 | no | |
69481 | no | 100 |
69480 | no | 99.997 |
halophily
- @ref: 24953
- salt: NaCl
- growth: positive
- tested relation: maximum
- concentration: 2 %(w/v)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
24953 | 5291 | gelatin | - | hydrolysis |
24953 | 17234 | glucose | - | fermentation |
24953 | 17632 | nitrate | - | reduction |
24953 | 17521 | (-)-quinic acid | + | carbon source |
24953 | 16865 | gamma-aminobutyric acid | + | carbon source |
24953 | 15963 | ribitol | + | carbon source |
24953 | 17925 | alpha-D-glucose | + | carbon source |
24953 | 36219 | alpha-lactose | + | carbon source |
24953 | 73706 | bromosuccinate | + | carbon source |
24953 | 17057 | cellobiose | + | carbon source |
24953 | 16383 | cis-aconitate | + | carbon source |
24953 | 18333 | D-arabitol | + | carbon source |
24953 | 15824 | D-fructose | + | carbon source |
24953 | 12936 | D-galactose | + | carbon source |
24953 | 16899 | D-mannitol | + | carbon source |
24953 | 16024 | D-mannose | + | carbon source |
24953 | 27605 | D-psicose | + | carbon source |
24953 | 17924 | D-sorbitol | + | carbon source |
24953 | 23652 | dextrin | + | carbon source |
24953 | 4853 | esculin | + | hydrolysis |
24953 | 28066 | gentiobiose | + | carbon source |
24953 | 17754 | glycerol | + | carbon source |
24953 | 24741 | hydroxyproline | + | carbon source |
24953 | 17268 | myo-inositol | + | carbon source |
24953 | 30849 | L-arabinose | + | carbon source |
24953 | 17196 | L-asparagine | + | carbon source |
24953 | 29991 | L-aspartate | + | carbon source |
24953 | 18287 | L-fucose | + | carbon source |
24953 | 29985 | L-glutamate | + | carbon source |
24953 | 15971 | L-histidine | + | carbon source |
24953 | 15729 | L-ornithine | + | carbon source |
24953 | 17203 | L-proline | + | carbon source |
24953 | 62345 | L-rhamnose | + | carbon source |
24953 | 24996 | lactate | + | carbon source |
24953 | 6359 | lactulose | + | carbon source |
24953 | 17306 | maltose | + | carbon source |
24953 | 28053 | melibiose | + | carbon source |
24953 | 320055 | methyl beta-D-glucopyranoside | + | carbon source |
24953 | 51850 | methyl pyruvate | + | carbon source |
24953 | 75146 | monomethyl succinate | + | carbon source |
24953 | 28037 | N-acetylgalactosamine | + | carbon source |
24953 | 506227 | N-acetylglucosamine | + | carbon source |
24953 | 16634 | raffinose | + | carbon source |
24953 | 17992 | sucrose | + | carbon source |
24953 | 27082 | trehalose | + | carbon source |
24953 | 32528 | turanose | + | carbon source |
24953 | 27248 | urocanic acid | + | carbon source |
24953 | 17151 | xylitol | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
24953 | arginine dihydrolase | - | 3.5.3.6 |
24953 | beta-galactosidase | + | 3.2.1.23 |
24953 | beta-glucosidase | + | 3.2.1.21 |
24953 | catalase | + | 1.11.1.6 |
24953 | tryptophan deaminase | - | 4.1.99.1 |
24953 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_4163.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_62;97_441;98_503;99_4163&stattab=map
- Last taxonomy: Rhizobium
- 16S sequence: KX022634
- Sequence Identity:
- Total samples: 92
- soil counts: 23
- aquatic counts: 5
- animal counts: 2
- plant counts: 62
Sequence information
16S sequences
- @ref: 24953
- description: 16S rRNA
- accession: KX022634
- database: nuccore
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Rhizobium altiplani BR 10423 | GCA_001542405 | scaffold | ncbi | 1864509 |
66792 | Rhizobium sp. BR10423 | 1755240.3 | wgs | patric | 1864509 |
66792 | Rhizobium altiplani BR10423 | 2744054510 | draft | img | 1864509 |
GC content
- @ref: 24953
- GC-content: 57.6
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | no | 82.248 | no |
gram-positive | no | 97.793 | no |
anaerobic | no | 97.913 | yes |
aerobic | yes | 90.746 | yes |
halophile | no | 92.995 | no |
spore-forming | no | 93.455 | yes |
glucose-util | yes | 90.84 | no |
motile | yes | 89.688 | yes |
thermophile | no | 99.43 | no |
glucose-ferment | no | 92.122 | yes |
External links
@ref: 24953
culture collection no.: BR 10423, HAMBI 3664
literature
- topic: Phylogeny
- Pubmed-ID: 27453319
- title: Rhizobium altiplani sp. nov., isolated from effective nodules on Mimosa pudica growing in untypically alkaline soil in central Brazil.
- authors: Barauna AC, Rouws LFM, Simoes-Araujo JL, Dos Reis Junior FB, Iannetta PPM, Maluk M, Goi SR, Reis VM, James EK, Zilli JE
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.001322
- year: 2016
- mesh: Bacterial Typing Techniques, Base Composition, Brazil, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Mimosa/*microbiology, Nitrogen Fixation, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics/isolation & purification, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Soil/chemistry, Symbiosis
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
24953 | A. C. R. Baraúna, Luc F. M.,Simoes-Araujo, Jean L.,dos Reis Junior, Fábio B.,Iannetta, Pietro P. M.,Maluk, Marta,Goi, Silvia R.,Reis, Veronica M.,James, Euan K.,Zilli, Jerri E. | Rhizobium altiplani sp. nov., isolated from effective nodules on Mimosa pudica growing in untypically alkaline soil in central Brazil | 10.1099/ijsem.0.001322 | IJSEM 66: 4118-4124 2016 | 27453319 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |