Strain identifier

BacDive ID: 133168

Type strain: Yes

Species: Skermanella rosea

Strain Designation: M1

Strain history: S.-S. Lee; KEMB, Kyonggi Univ., South Korea; M1.

NCBI tax ID(s): 1817965 (species)

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General

@ref: 24943

BacDive-ID: 133168

keywords: 16S sequence, Bacteria, chemoorganoheterotroph, Gram-negative, motile, rod-shaped

description: Skermanella rosea M1 is a chemoorganoheterotroph, Gram-negative, motile bacterium that was isolated from hydrocarbon-contaminated desert sands.

NCBI tax id

  • NCBI tax id: 1817965
  • Matching level: species

strain history

  • @ref: 67770
  • history: S.-S. Lee; KEMB, Kyonggi Univ., South Korea; M1.

doi: 10.13145/bacdive133168.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Azospirillaceae
  • genus: Skermanella
  • species: Skermanella rosea
  • full scientific name: Skermanella rosea Subhash and Lee 2016

@ref: 24943

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Rhodospirillaceae

genus: Skermanella

species: Skermanella rosea

strain designation: M1

type strain: yes

Morphology

cell morphology

  • @ref: 24943
  • gram stain: negative
  • cell length: 1.4-1.5 µm
  • cell width: 0.8-0.9 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: polar

colony morphology

  • @ref: 24943
  • colony color: dark pink

pigmentation

  • @ref: 24943
  • production: yes
  • name: Carotenoid pigments

Culture and growth conditions

culture temp

@refgrowthtypetemperature
24943positivegrowth12-45
24943positiveoptimum27-32
67770positivegrowth30

culture pH

@refabilitytypepHPH range
24943positivegrowth6.5-7.5
24943positiveoptimum6.1-8.8alkaliphile

Physiology and metabolism

nutrition type

  • @ref: 24943
  • type: chemoorganoheterotroph

halophily

@refsaltgrowthtested relationconcentration
24943NaClpositivegrowth0-4.5 %
24943NaClpositiveoptimum0-0.5 %
24943NaClpositivemaximum4.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2494385146carboxymethylcellulose-hydrolysis
2494317029chitin-hydrolysis
2494317057cellobiose-carbon source
2494317057cellobiose-builds acid from
2494316991dna-hydrolysis
249435291gelatin-hydrolysis
2494317234glucose-fermentation
2494329987glutamate-carbon source
2494362345L-rhamnose-carbon source
2494317716lactose-carbon source
2494317306maltose-carbon source
2494317306maltose-builds acid from
2494317632nitrate-reduction
2494316634raffinose-carbon source
2494316634raffinose-builds acid from
2494328017starch-hydrolysis
2494327897tryptophan-energy source
2494316199urea-hydrolysis
2494335391aspartate+carbon source
24943casein+hydrolysis
2494315824D-fructose+carbon source
2494315824D-fructose+builds acid from
2494312936D-galactose+carbon source
2494312936D-galactose+builds acid from
2494317634D-glucose+carbon source
2494317634D-glucose+builds acid from
2494316899D-mannitol+carbon source
2494317924D-sorbitol+carbon source
2494330849L-arabinose+carbon source
2494330849L-arabinose+builds acid from
2494315361pyruvate+carbon source
2494317992sucrose+carbon source
2494317992sucrose+builds acid from
2494353424tween 20+hydrolysis
2494353426tween 80+hydrolysis
2494318186tyrosine+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitiveis resistant
2494317698chloramphenicolyesyes
2494328971ampicillinyesyes
24943100147nalidixic acidyesyes
2494318208penicillin gyesyes
2494328077rifampicinyesyes

metabolite production

@refChebi-IDmetaboliteproduction
2494315688acetoinno
2494335581indoleno

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-testindole test
2494317234glucose-
2494315688acetoin-
2494335581indole-

enzymes

@refvalueactivityec
24943acid phosphatase+3.1.3.2
24943alkaline phosphatase+3.1.3.1
24943alpha-chymotrypsin-3.4.21.1
24943alpha-fucosidase-3.2.1.51
24943alpha-galactosidase-3.2.1.22
24943alpha-glucosidase+3.2.1.20
24943alpha-mannosidase-3.2.1.24
24943arginine dihydrolase-3.5.3.6
24943beta-galactosidase-3.2.1.23
24943beta-glucosidase-3.2.1.21
24943beta-glucuronidase-3.2.1.31
24943catalase+1.11.1.6
24943cystine arylamidase-3.4.11.3
24943cytochrome oxidase+1.9.3.1
24943esterase (C 4)+
24943esterase lipase (C 8)+
24943leucine arylamidase+3.4.11.1
24943lipase (C 14)-
24943N-acetyl-beta-glucosaminidase-3.2.1.52
24943naphthol-AS-BI-phosphohydrolase+
24943trypsin-3.4.21.4
24943tryptophan deaminase-4.1.99.1
24943valine arylamidase-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
24943hydrocarbon-contaminated desert sandsKuwaitKWTAsia
67770Hydrocarbon-contaminated desert sandsKuwaitKWTAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Terrestrial#Desert
#Environmental#Terrestrial#Sandy

taxonmaps

  • @ref: 69479
  • File name: preview.99_88364.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_47;96_7252;97_8697;98_21434;99_88364&stattab=map
  • Last taxonomy: Skermanella
  • 16S sequence: LT545982
  • Sequence Identity:
  • Total samples: 30
  • soil counts: 14
  • aquatic counts: 3
  • animal counts: 13

Sequence information

16S sequences

  • @ref: 24943
  • description: Skermanella sp. M1 partial 16S rRNA gene, strain M1
  • accession: LT545982
  • length: 1416
  • database: nuccore
  • NCBI tax ID: 1817965

GC content

  • @ref: 24943
  • GC-content: 69.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 24943

culture collection no.: KEMB 2255-458, JCM 31276

literature

  • topic: Phylogeny
  • Pubmed-ID: 27406793
  • title: Skermanella rosea sp. nov., isolated from hydrocarbon-contaminated desert sands.
  • authors: Subhash Y, Lee SS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001293
  • year: 2016
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Desert Climate, Fatty Acids/chemistry, *Hydrocarbons, Kuwait, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodospirillaceae/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Silicon Dioxide, *Soil Microbiology, Soil Pollutants
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24943Y. L. Subhash, Sang-SeobSkermanella rosea sp. nov., isolated from hydrocarbon-contaminated desert sands10.1099/ijsem.0.001293IJSEM 66: 3951-3956 201627406793
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/