Strain identifier
BacDive ID: 133152
Type strain:
Species: Streptococcus dentiloxodontae
Strain history: K. Takada NUM 2404 <-- M. Hirasawa.
NCBI tax ID(s): 1352223 (species)
General
@ref: 64135
BacDive-ID: 133152
DSM-Number: 27381
keywords: 16S sequence, Bacteria, facultative anaerobe, Gram-positive, coccus-shaped
description: Streptococcus dentiloxodontae DSM 27381 is a facultative anaerobe, Gram-positive, coccus-shaped bacterium that was isolated from clinical specimens of the elephant oral cavity.
NCBI tax id
- NCBI tax id: 1352223
- Matching level: species
strain history
@ref | history |
---|---|
64135 | <- K. Takada, Nihon Univ., School of Dentistry, Matsudo; NUM 2404 <- M. Hirasawa |
67770 | K. Takada NUM 2404 <-- M. Hirasawa. |
doi: 10.13145/bacdive133152.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus dentiloxodontae
- full scientific name: Streptococcus dentiloxodontae Shinozaki-Kuwahara et al. 2016
@ref: 64135
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus dentiloxodontae
full scientific name: Streptococcus dentiloxodontae Shinozaki-Kuwahara et al. 2016
type strain: yes
Morphology
cell morphology
- @ref: 24923
- gram stain: positive
- cell shape: coccus-shaped
colony morphology
@ref | type of hemolysis | colony size | colony color | incubation period | medium used |
---|---|---|---|---|---|
24923 | gamma | 0.75-1.0 mm | whtie | 1 day | blood agar |
24923 | dark blue | MS agar |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
24923 | blood agar | yes | ||
24923 | MS agar | yes | ||
64135 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
64135 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature |
---|---|---|---|
64135 | positive | growth | 37 |
67770 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
- @ref: 24923
- oxygen tolerance: facultative anaerobe
spore formation
- @ref: 24923
- spore formation: no
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
24923 | 15963 | ribitol | - | builds acid from |
24923 | 23456 | cyclodextrin | - | builds acid from |
24923 | 17108 | D-arabinose | - | builds acid from |
24923 | 18333 | D-arabitol | - | builds acid from |
24923 | 28847 | D-fucose | - | builds acid from |
24923 | 65327 | D-xylose | - | builds acid from |
24923 | 17113 | erythritol | - | builds acid from |
24923 | 16813 | galactitol | - | builds acid from |
24923 | 28260 | galactose | - | builds acid from |
24923 | 24265 | gluconate | - | builds acid from |
24923 | 17754 | glycerol | - | builds acid from |
24923 | 606565 | hippurate | - | hydrolysis |
24923 | 17268 | myo-inositol | - | builds acid from |
24923 | 15443 | inulin | - | builds acid from |
24923 | 18403 | L-arabitol | - | builds acid from |
24923 | 18287 | L-fucose | - | builds acid from |
24923 | 65328 | L-xylose | - | builds acid from |
24923 | 29864 | mannitol | - | builds acid from |
24923 | 6731 | melezitose | - | builds acid from |
24923 | 28053 | melibiose | - | builds acid from |
24923 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
24923 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
24923 | 320055 | methyl beta-D-glucopyranoside | - | builds acid from |
24923 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
24923 | 506227 | N-acetylglucosamine | - | builds acid from |
24923 | 27941 | pullulan | - | builds acid from |
24923 | 26546 | rhamnose | - | builds acid from |
24923 | 30911 | sorbitol | - | builds acid from |
24923 | 27922 | sorbose | - | builds acid from |
24923 | 28017 | starch | - | builds acid from |
24923 | 32528 | turanose | - | builds acid from |
24923 | 17151 | xylitol | - | builds acid from |
24923 | 27613 | amygdalin | + | builds acid from |
24923 | 18305 | arbutin | + | builds acid from |
24923 | 17057 | cellobiose | + | builds acid from |
24923 | 4853 | esculin | + | hydrolysis |
24923 | 28757 | fructose | + | builds acid from |
24923 | 28066 | gentiobiose | + | builds acid from |
24923 | 17234 | glucose | + | builds acid from |
24923 | 17306 | maltose | + | builds acid from |
24923 | 37684 | mannose | + | builds acid from |
24923 | 16634 | raffinose | + | builds acid from |
24923 | 17814 | salicin | + | builds acid from |
24923 | 17992 | sucrose | + | builds acid from |
24923 | 27082 | trehalose | + | builds acid from |
68381 | 29016 | arginine | - | hydrolysis |
68381 | 16988 | D-ribose | - | builds acid from |
68381 | 16899 | D-mannitol | - | builds acid from |
68381 | 30911 | sorbitol | - | builds acid from |
68381 | 17716 | lactose | - | builds acid from |
68381 | 27082 | trehalose | + | builds acid from |
68381 | 16634 | raffinose | - | builds acid from |
68381 | 17992 | sucrose | + | builds acid from |
68381 | 30849 | L-arabinose | - | builds acid from |
68381 | 18333 | D-arabitol | - | builds acid from |
68381 | 40585 | alpha-cyclodextrin | - | builds acid from |
68381 | 606565 | hippurate | + | hydrolysis |
68381 | 28087 | glycogen | - | builds acid from |
68381 | 27941 | pullulan | - | builds acid from |
68381 | 17306 | maltose | + | builds acid from |
68381 | 28053 | melibiose | - | builds acid from |
68381 | 6731 | melezitose | - | builds acid from |
68381 | 320055 | methyl beta-D-glucopyranoside | + | builds acid from |
68381 | 16443 | D-tagatose | - | builds acid from |
68381 | 16199 | urea | - | hydrolysis |
antibiotic resistance
- @ref: 24923
- ChEBI: 28669
- metabolite: bacitracin
- is antibiotic: yes
- is sensitive: yes
- sensitivity conc.: 2 Unit
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
24923 | 15688 | acetoin | yes |
68381 | 15688 | acetoin | yes |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test |
---|---|---|---|
24923 | 15688 | acetoin | + |
68381 | 15688 | acetoin | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
24923 | 6-phospho-beta-galactosidase | - | 3.2.1.85 |
24923 | acid phosphatase | + | 3.1.3.2 |
24923 | alkaline phosphatase | + | 3.1.3.1 |
24923 | alpha-fucosidase | - | 3.2.1.51 |
24923 | alpha-galactosidase | - | 3.2.1.22 |
24923 | alpha-glucosidase | - | 3.2.1.20 |
24923 | alpha-mannosidase | - | 3.2.1.24 |
24923 | arginine dihydrolase | - | 3.5.3.6 |
24923 | beta-glucosidase | + | 3.2.1.21 |
24923 | beta-glucuronidase | - | 3.2.1.31 |
24923 | beta-mannosidase | - | 3.2.1.25 |
24923 | catalase | - | 1.11.1.6 |
24923 | chymotrypsin | - | 3.4.4.5 |
24923 | cystine arylamidase | - | 3.4.11.3 |
24923 | esterase | - | |
24923 | esterase lipase (C 8) | - | |
24923 | glycyl tryptophan arylamidase | - | |
24923 | leucine arylamidase | + | 3.4.11.1 |
24923 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
24923 | naphthol-AS-BI-phosphohydrolase | + | |
24923 | trypsin | - | 3.4.21.4 |
24923 | urease | - | 3.5.1.5 |
24923 | valine arylamidase | + | |
68381 | urease | - | 3.5.1.5 |
68381 | beta-mannosidase | - | 3.2.1.25 |
68381 | glycyl tryptophan arylamidase | - | |
68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68381 | beta-galactosidase | - | 3.2.1.23 |
68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | |
68381 | alpha-galactosidase | - | 3.2.1.22 |
68381 | beta-glucuronidase | - | 3.2.1.31 |
68381 | beta-glucosidase | + | 3.2.1.21 |
68381 | arginine dihydrolase | - | 3.5.3.6 |
API rID32STR
@ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
64135 | - | + | - | - | - | +/- | - | - | - | - | + | - | + | - | - | - | + | + | - | - | - | - | + | - | - | + | - | - | + | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
24923 | clinical specimens of the elephant oral cavity | ||||
64135 | oral cavity of an elephant in a zoo | Chiba, Ichihara Elephant Kingdom | Japan | JPN | Asia |
67770 | Oral cavity of elephants in a zoo (Ichihara Elephant Kingdom) | Chiba Pref. | Japan | JPN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Medical environment | #Clinic |
#Infection | #Patient | #Specimen |
#Host | #Mammals | |
#Host Body-Site | #Oral cavity and airways |
Safety information
risk assessment
- @ref: 64135
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 64135
- description: Streptococcus dentiloxodontae gene for 16S ribosomal RNA, partial sequence
- accession: AB828596
- length: 1550
- database: nuccore
- NCBI tax ID: 1352223
GC content
@ref | GC-content | method |
---|---|---|
24923 | 41.11-43.69 | high performance liquid chromatography (HPLC) |
64135 | 42.4 | high performance liquid chromatography (HPLC) |
67770 | 42.4-42.4 | high performance liquid chromatography (HPLC) |
External links
@ref: 64135
culture collection no.: DSM 27381, JCM 19284, NUM 2404
straininfo link
- @ref: 91380
- straininfo: 399127
literature
- topic: Phylogeny
- Pubmed-ID: 27381035
- title: Streptococcusdentiloxodontae sp. nov., isolated from the oral cavity of elephants.
- authors: Shinozaki-Kuwahara N, Saito M, Hirasawa M, Hirasawa M, Takada K
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.001280
- year: 2016
- mesh: Animals, Bacterial Typing Techniques, Base Composition, Chaperonin 60/genetics, DNA, Bacterial/genetics, Elephants/*microbiology, Genes, Bacterial, Mouth/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptococcus/*classification/genetics/isolation & purification
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | journal | pubmed | catalogue |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
24923 | N. S. Shinozaki-Kuwahara, Masanori,Hirasawa, Masaaki,Hirasawa, Masatomo,Takada, Kazuko | Streptococcus dentiloxodontae sp. nov., isolated from the oral cavity of elephants | 10.1099/ijsem.0.001280 | IJSEM 66: 3878-3883 2016 | 27381035 | |
64135 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27381 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27381) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68381 | Automatically annotated from API rID32STR | |||||
91380 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399127.1 |