Strain identifier

BacDive ID: 133152

Type strain: Yes

Species: Streptococcus dentiloxodontae

Strain history: K. Takada NUM 2404 <-- M. Hirasawa.

NCBI tax ID(s): 1352223 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 64135

BacDive-ID: 133152

DSM-Number: 27381

keywords: 16S sequence, Bacteria, facultative anaerobe, Gram-positive, coccus-shaped

description: Streptococcus dentiloxodontae DSM 27381 is a facultative anaerobe, Gram-positive, coccus-shaped bacterium that was isolated from clinical specimens of the elephant oral cavity.

NCBI tax id

  • NCBI tax id: 1352223
  • Matching level: species

strain history

@refhistory
64135<- K. Takada, Nihon Univ., School of Dentistry, Matsudo; NUM 2404 <- M. Hirasawa
67770K. Takada NUM 2404 <-- M. Hirasawa.

doi: 10.13145/bacdive133152.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus dentiloxodontae
  • full scientific name: Streptococcus dentiloxodontae Shinozaki-Kuwahara et al. 2016

@ref: 64135

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus dentiloxodontae

full scientific name: Streptococcus dentiloxodontae Shinozaki-Kuwahara et al. 2016

type strain: yes

Morphology

cell morphology

  • @ref: 24923
  • gram stain: positive
  • cell shape: coccus-shaped

colony morphology

@reftype of hemolysiscolony sizecolony colorincubation periodmedium used
24923gamma0.75-1.0 mmwhtie1 dayblood agar
24923dark blueMS agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24923blood agaryes
24923MS agaryes
64135COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
64135TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
64135positivegrowth37
67770positivegrowth37

Physiology and metabolism

oxygen tolerance

  • @ref: 24923
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 24923
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2492315963ribitol-builds acid from
2492323456cyclodextrin-builds acid from
2492317108D-arabinose-builds acid from
2492318333D-arabitol-builds acid from
2492328847D-fucose-builds acid from
2492365327D-xylose-builds acid from
2492317113erythritol-builds acid from
2492316813galactitol-builds acid from
2492328260galactose-builds acid from
2492324265gluconate-builds acid from
2492317754glycerol-builds acid from
24923606565hippurate-hydrolysis
2492317268myo-inositol-builds acid from
2492315443inulin-builds acid from
2492318403L-arabitol-builds acid from
2492318287L-fucose-builds acid from
2492365328L-xylose-builds acid from
2492329864mannitol-builds acid from
249236731melezitose-builds acid from
2492328053melibiose-builds acid from
24923320061methyl alpha-D-glucopyranoside-builds acid from
2492343943methyl alpha-D-mannoside-builds acid from
24923320055methyl beta-D-glucopyranoside-builds acid from
2492374863methyl beta-D-xylopyranoside-builds acid from
24923506227N-acetylglucosamine-builds acid from
2492327941pullulan-builds acid from
2492326546rhamnose-builds acid from
2492330911sorbitol-builds acid from
2492327922sorbose-builds acid from
2492328017starch-builds acid from
2492332528turanose-builds acid from
2492317151xylitol-builds acid from
2492327613amygdalin+builds acid from
2492318305arbutin+builds acid from
2492317057cellobiose+builds acid from
249234853esculin+hydrolysis
2492328757fructose+builds acid from
2492328066gentiobiose+builds acid from
2492317234glucose+builds acid from
2492317306maltose+builds acid from
2492337684mannose+builds acid from
2492316634raffinose+builds acid from
2492317814salicin+builds acid from
2492317992sucrose+builds acid from
2492327082trehalose+builds acid from
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose+builds acid from
6838116634raffinose-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate+hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

antibiotic resistance

  • @ref: 24923
  • ChEBI: 28669
  • metabolite: bacitracin
  • is antibiotic: yes
  • is sensitive: yes
  • sensitivity conc.: 2 Unit

metabolite production

@refChebi-IDmetaboliteproduction
2492315688acetoinyes
6838115688acetoinyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
2492315688acetoin+
6838115688acetoin+

enzymes

@refvalueactivityec
249236-phospho-beta-galactosidase-3.2.1.85
24923acid phosphatase+3.1.3.2
24923alkaline phosphatase+3.1.3.1
24923alpha-fucosidase-3.2.1.51
24923alpha-galactosidase-3.2.1.22
24923alpha-glucosidase-3.2.1.20
24923alpha-mannosidase-3.2.1.24
24923arginine dihydrolase-3.5.3.6
24923beta-glucosidase+3.2.1.21
24923beta-glucuronidase-3.2.1.31
24923beta-mannosidase-3.2.1.25
24923catalase-1.11.1.6
24923chymotrypsin-3.4.4.5
24923cystine arylamidase-3.4.11.3
24923esterase-
24923esterase lipase (C 8)-
24923glycyl tryptophan arylamidase-
24923leucine arylamidase+3.4.11.1
24923N-acetyl-beta-glucosaminidase-3.2.1.52
24923naphthol-AS-BI-phosphohydrolase+
24923trypsin-3.4.21.4
24923urease-3.5.1.5
24923valine arylamidase+
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
64135-+---+/-----+-+---++----+--+--+---

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
24923clinical specimens of the elephant oral cavity
64135oral cavity of an elephant in a zooChiba, Ichihara Elephant KingdomJapanJPNAsia
67770Oral cavity of elephants in a zoo (Ichihara Elephant Kingdom)Chiba Pref.JapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Infection#Medical environment#Clinic
#Infection#Patient#Specimen
#Host#Mammals
#Host Body-Site#Oral cavity and airways

Safety information

risk assessment

  • @ref: 64135
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 64135
  • description: Streptococcus dentiloxodontae gene for 16S ribosomal RNA, partial sequence
  • accession: AB828596
  • length: 1550
  • database: nuccore
  • NCBI tax ID: 1352223

GC content

@refGC-contentmethod
2492341.11-43.69high performance liquid chromatography (HPLC)
6413542.4high performance liquid chromatography (HPLC)
6777042.4-42.4high performance liquid chromatography (HPLC)

External links

@ref: 64135

culture collection no.: DSM 27381, JCM 19284, NUM 2404

straininfo link

  • @ref: 91380
  • straininfo: 399127

literature

  • topic: Phylogeny
  • Pubmed-ID: 27381035
  • title: Streptococcusdentiloxodontae sp. nov., isolated from the oral cavity of elephants.
  • authors: Shinozaki-Kuwahara N, Saito M, Hirasawa M, Hirasawa M, Takada K
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001280
  • year: 2016
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, Chaperonin 60/genetics, DNA, Bacterial/genetics, Elephants/*microbiology, Genes, Bacterial, Mouth/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptococcus/*classification/genetics/isolation & purification
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24923N. S. Shinozaki-Kuwahara, Masanori,Hirasawa, Masaaki,Hirasawa, Masatomo,Takada, KazukoStreptococcus dentiloxodontae sp. nov., isolated from the oral cavity of elephants10.1099/ijsem.0.001280IJSEM 66: 3878-3883 201627381035
64135Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27381Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27381)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68381Automatically annotated from API rID32STR
91380Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399127.1