Strain identifier

BacDive ID: 133151

Type strain: Yes

Species: Salinicoccus amylolyticus

Strain Designation: JC304

Strain history: <- Ch. Sasikala, Jawaharlal Nehru Technological Univ., India

NCBI tax ID(s): 1671557 (species)

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General

@ref: 24920

BacDive-ID: 133151

keywords: 16S sequence, Bacteria, aerobe, Gram-positive, coccus-shaped, colony-forming

description: Salinicoccus amylolyticus JC304 is an aerobe, Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from salt pan along a coast.

NCBI tax id

  • NCBI tax id: 1671557
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Ch. Sasikala, Jawaharlal Nehru Technological Univ., India

doi: 10.13145/bacdive133151.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Salinicoccus
  • species: Salinicoccus amylolyticus
  • full scientific name: Salinicoccus amylolyticus Srinivas et al. 2016

@ref: 24920

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Staphylococcaceae

genus: Salinicoccus

species: Salinicoccus amylolyticus

strain designation: JC304

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell shapemotility
24920positive1.0-2.5 µmcoccus-shapedno
67771coccus-shaped
67771positive

colony morphology

  • @ref: 24920
  • colony color: pink-red
  • colony shape: circular
  • medium used: Marine agar

Culture and growth conditions

culture medium

  • @ref: 24920
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperature
24920positivegrowth15-40
24920positiveoptimum37
67771positivegrowth30

culture pH

@refabilitytypepHPH range
24920positivegrowth8.0-12.0alkaliphile
24920positiveoptimum9

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
24920NaClpositivemaximum25 %(w/v)
24920NaClpositiveoptimum8 %(w/v)

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
24920casein-hydrolysis
24920citrate-carbon source16947
24920dna-hydrolysis16991
24920gelatin-hydrolysis5291
24920glucose-fermentation17234
24920nitrate-reduction17632
24920tryptophan-energy source27897
24920tween 80-hydrolysis53426
24920urea-hydrolysis16199
24920ribitol+growth15963
24920D-fructose+growth15824
24920D-glucose+growth17634
24920maltose+growth17306
24920galactose+growth28260
24920myo-inositol+growth17268
24920inulin+growth15443
24920mannitol+growth29864
24920melibiose+growth28053
24920pyruvate+growth15361
24920rhamnose+growth26546
24920starch+hydrolysis28017
24920sucrose+growth17992
24920trehalose+growth27082
24920xylose+growth18222

metabolite production

@refChebi-IDmetaboliteproduction
2492015688acetoinno
2492035581indoleno

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-testindole test
2492017234glucose-
2492015688acetoin-
2492035581indole-

enzymes

@refvalueactivityec
24920catalase+1.11.1.6
24920cytochrome oxidase+1.9.3.1
24920tryptophan deaminase-4.1.99.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
24920salt pan along a coastNari, Bhavnagar coast, GujaratIndiaINDAsia
67771From sediment, salt panNari, Bhavnagar coast, GujaratIndiaINDAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Coast
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_4396.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_2202;97_2665;98_3302;99_4396&stattab=map
  • Last taxonomy: Salinicoccus
  • 16S sequence: LN866629
  • Sequence Identity:
  • Total samples: 438
  • soil counts: 46
  • aquatic counts: 87
  • animal counts: 303
  • plant counts: 2

Sequence information

16S sequences

  • @ref: 24920
  • description: Salinicoccus sp. JC304 partial 16S rRNA gene, strain JC304, isolate Gj12
  • accession: LN866629
  • length: 1413
  • database: nuccore
  • NCBI tax ID: 1671557

GC content

@refGC-contentmethod
2492048high performance liquid chromatography (HPLC)
6777148.0

External links

@ref: 24920

culture collection no.: KCTC 33661, LMG 28757

literature

  • topic: Phylogeny
  • Pubmed-ID: 27381021
  • title: Salinicoccus amylolyticus sp. nov., isolated from a saltern.
  • authors: Srinivas A, Divyasree B, Tushar L, Suresh G, Sasikala C, Ramana CV
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001270
  • year: 2016
  • mesh: Amino Acids/chemistry, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, Staphylococcaceae/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24920A. D. Srinivas, B.,Tushar, L.,Suresh, G.,Sasikala, Ch.,Ramana, Ch. V.Salinicoccus amylolyticus sp. nov., isolated from a saltern10.1099/ijsem.0.001270IJSEM 66: 3814-3820 201627381021
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/