Strain identifier

BacDive ID: 133149

Type strain: Yes

Species: Flavobacterium terriphilum

Strain history: <- Hongchen Jiang, China Univ. of Geosciences (WUHAN)

NCBI tax ID(s): 1706838 (species)

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General

@ref: 24918

BacDive-ID: 133149

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, pigmented

description: Flavobacterium terriphilum CUG 00004 is an aerobe, mesophilic, Gram-negative bacterium that has a yellow pigmentation and was isolated from soil collected from the Kekexili Nature Reserve.

NCBI tax id

  • NCBI tax id: 1706838
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Hongchen Jiang, China Univ. of Geosciences (WUHAN)

doi: 10.13145/bacdive133149.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium terriphilum
  • full scientific name: Flavobacterium terriphilum Zhang et al. 2016

@ref: 24918

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium terriphilum

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
24918negative2.0-9.0 µm0.4-1.0 µmrod-shapedno
67771rod-shapedno
67771negative

colony morphology

@refmedium usedcolony colorcolony shapeincubation period
24918TSA, R2A agar and LB agar
24918GYM Streptomyces mediumblackirregular5 days

pigmentation

  • @ref: 24918
  • production: yes
  • color: yellow
  • name: Flexirubin pigmentation

Culture and growth conditions

culture medium

@refnamegrowth
24918TSA, R2A agar and LB agaryes
24918GYM Streptomyces mediumyes

culture temp

@refgrowthtypetemperaturerange
24918positiveoptimum30-35mesophilic
24918positivegrowth4-30
24918positiveoptimum28mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
24918positivegrowth7-9alkaliphile
24918positiveoptimum8
24918positiveoptimum7-10

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
24918aerobe
67771aerobe

spore formation

@refspore formation
24918no
67771no

halophily

@refsaltgrowthtested relationconcentration
24918NaClpositiveoptimum0-2 %
24918NaClpositivegrowth0-2 %(w/v)
24918NaClpositiveoptimum0 %(w/v)

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
24918645522-hydroxybutyrate-oxidation
24918739183-O-methyl-D-glucose-oxidation
2491836219alpha-lactose-oxidation
24918casein-degradation
2491817057cellobiose-oxidation
2491816947citrate-oxidation
2491818333D-arabitol-oxidation
2491829990D-aspartate-oxidation
2491828847D-fucose-oxidation
2491818024D-galacturonic acid-oxidation
2491830612D-glucarate-oxidation
2491814314D-glucose 6-phosphate-oxidation
2491815748D-glucuronate-oxidation
2491816523D-serine-oxidation
2491823652dextrin-oxidation
2491816537galactarate-oxidation
2491816865gamma-aminobutyric acid-oxidation
249185291gelatin-oxidation
2491817368hypoxanthine-degradation
2491816977L-alanine-oxidation
2491816467L-arginine-oxidation
2491818287L-fucose-oxidation
2491815971L-histidine-oxidation
2491862345L-rhamnose-oxidation
2491824996lactate-oxidation
2491848607lithium chloride-oxidation
2491828053melibiose-oxidation
24918320055methyl beta-D-glucopyranoside-oxidation
2491863154N-acetyl-beta-D-mannosamine-oxidation
2491828037N-acetylgalactosamine-oxidation
24918506227N-acetylglucosamine-oxidation
2491835418n-acetylneuraminate-oxidation
2491817272propionate-oxidation
2491816634raffinose-oxidation
2491817164stachyose-oxidation
2491828017starch-degradation
2491817992sucrose-oxidation
2491818186tyrosine-degradation
2491815318xanthine-degradation
2491817521(-)-quinic acid+oxidation
2491815588D-malate+oxidation
2491815589L-malate+oxidation
24918645522-hydroxybutyrate+oxidation
24918370543-hydroxybutyrate+oxidation
2491830089acetate+oxidation
2491813705acetoacetate+oxidation
24918161680aztreonam+oxidation
2491815824D-fructose+oxidation
2491812936D-galactose+oxidation
249188391D-gluconate+oxidation
2491817634D-glucose+oxidation
2491816899D-mannitol+oxidation
2491816024D-mannose+oxidation
2491816523D-serine+oxidation
2491871321fusidate+oxidation
2491817754glycerol+oxidation
2491817268myo-inositol+oxidation
2491829991L-aspartate+oxidation
2491829985L-glutamate+oxidation
2491818183L-pyroglutamic acid+oxidation
2491824996lactate+oxidation
2491874611methyl (R)-lactate+oxidation
2491851850methyl pyruvate+oxidation
2491850694minocycline+oxidation
24918100147nalidixic acid+oxidation
2491875248potassium tellurite+oxidation
2491828077rifampicin+oxidation
249189215spectinomycin+oxidation
2491875198tetrazolium blue+oxidation
2491875193tetrazolium violet+oxidation
2491827082trehalose+oxidation
2491845735troleandomycin+oxidation
2491832528turanose+oxidation
249185291gelatin-hydrolysis
2491817632nitrate-reduction
2491828017starch-hydrolysis
2491817992sucrose-builds acid from
2491853426tween 80-hydrolysis
2491816199urea-hydrolysis
2491817925alpha-D-glucose+carbon source
2491817925alpha-D-glucose+nitrogen source
2491836219alpha-lactose+carbon source
2491836219alpha-lactose+nitrogen source
2491817057cellobiose+carbon source
2491817057cellobiose+nitrogen source
2491815824D-fructose+carbon source
2491815824D-fructose+nitrogen source
2491812936D-galactose+carbon source
2491812936D-galactose+nitrogen source
249188391D-gluconate+carbon source
249188391D-gluconate+nitrogen source
2491816899D-mannitol+carbon source
2491816899D-mannitol+nitrogen source
2491816024D-mannose+carbon source
2491816024D-mannose+nitrogen source
2491823652dextrin+carbon source
2491823652dextrin+nitrogen source
2491828066gentiobiose+carbon source
2491828066gentiobiose+nitrogen source
2491817234glucose+builds acid from
2491817754glycerol+carbon source
2491817754glycerol+nitrogen source
2491816235guanine+carbon source
2491816235guanine+nitrogen source
2491817306maltose+carbon source
2491817306maltose+nitrogen source
24918506227N-acetylglucosamine+carbon source
24918506227N-acetylglucosamine+nitrogen source
2491817309pectin+carbon source
2491817309pectin+nitrogen source
2491816634raffinose+carbon source
2491816634raffinose+nitrogen source
2491817814salicin+carbon source
2491817814salicin+nitrogen source
2491817164stachyose+carbon source
2491817164stachyose+nitrogen source
2491817992sucrose+carbon source
2491817992sucrose+nitrogen source
2491827082trehalose+carbon source
2491827082trehalose+nitrogen source
2491832528turanose+carbon source
2491832528turanose+nitrogen source

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitive
24918474053cefazolinyesyes
249183493cefoperazoneyesyes
249183508ceftazidimeyesyes
2491829007ceftriaxoneyesyes
249183515cefuroximeyesyes
249185195furazolidoneyesyes
249187809oxacillinyesyes
2491818208penicillin gyesyes
249188232piperacillinyesyes
249189332sulfamethoxazoleyesyes

enzymes

@refvalueactivityec
24918acid phosphatase-3.1.3.2
24918alpha-chymotrypsin+3.4.21.1
24918alpha-fucosidase-3.2.1.51
24918alpha-galactosidase-3.2.1.22
24918alpha-glucosidase-3.2.1.20
24918alpha-mannosidase-3.2.1.24
24918beta-galactosidase-3.2.1.23
24918beta-glucosidase-3.2.1.21
24918beta-glucuronidase-3.2.1.31
24918cystine arylamidase-3.4.11.3
24918lipase (C 14)-
24918N-acetyl-beta-glucosaminidase-3.2.1.52
24918naphthol-AS-BI-phosphohydrolase-
24918trypsin-3.4.21.4
24918urease-3.5.1.5
24918valine arylamidase-
24918acid phosphatase+3.1.3.2
24918alkaline phosphatase+3.1.3.1
24918alpha-galactosidase+3.2.1.22
24918alpha-glucosidase+3.2.1.20
24918catalase+1.11.1.6
24918cytochrome oxidase-1.9.3.1
24918DNase+
24918esterase (C 4)+
24918esterase lipase (C 8)+
24918leucine arylamidase+3.4.11.1
24918naphthol-AS-BI-phosphohydrolase+
24918trypsin+3.4.21.4
24918valine arylamidase+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
24918soil collected from the Kekexili Nature ReserveQinghai ProvinceChinaCHNAsia
67771From soilthe Kekexili Nature Reserve, Qinghai ProvinceChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_84773.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_66;96_3647;97_9409;98_58757;99_84773&stattab=map
  • Last taxonomy: Flavobacterium
  • 16S sequence: KT592306
  • Sequence Identity:
  • Total samples: 148
  • soil counts: 33
  • aquatic counts: 69
  • animal counts: 12
  • plant counts: 34

Sequence information

16S sequences

  • @ref: 24918
  • description: Flavobacterium sp. CUG00004 16S ribosomal RNA gene, partial sequence
  • accession: KT592306
  • length: 1519
  • database: nuccore
  • NCBI tax ID: 1706838

GC content

@refGC-contentmethod
2491836.3high performance liquid chromatography (HPLC)
2491875.7high performance liquid chromatography (HPLC)
6777136.3

External links

@ref: 24918

culture collection no.: CUG 00004, CCTCC AB 2014151, KCTC 42876

literature

  • topic: Phylogeny
  • Pubmed-ID: 27469138
  • title: Flavobacterium terriphilum sp. nov., isolated from soil.
  • authors: Zhang G, Xian W, Chu Q, Yang J, Liu W, Yang L, Xiao M, Jiang H, Li W
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001347
  • year: 2016
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24918G. X. Zhang, Wendong,Chu, Qiaoling,Yang, Jian,Liu, Wen,Yang, Lingling,Xiao, Min,Jiang, Hongchen,Li, WenjunFlavobacterium terriphilum sp. nov., isolated from soil10.1099/ijsem.0.001347IJSEM 66: 4276-4281 201627469138
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/