Strain identifier

BacDive ID: 133148

Type strain: Yes

Species: Maribacter litorisediminis

Strain Designation: HPTF-2

Strain history: <- Jung-Hoon Yoon, Sungkyunkwan Univ.

NCBI tax ID(s): 1846261 (species)

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General

@ref: 24916

BacDive-ID: 133148

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Maribacter litorisediminis HPTF-2 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from tidal flat sediment.

NCBI tax id

  • NCBI tax id: 1846261
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Jung-Hoon Yoon, Sungkyunkwan Univ.

doi: 10.13145/bacdive133148.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Maribacter
  • species: Maribacter litorisediminis
  • full scientific name: Maribacter litorisediminis Park et al. 2016

@ref: 24916

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Maribacter

species: Maribacter litorisediminis

strain designation: HPTF-2

type strain: yes

Morphology

cell morphology

  • @ref: 24916
  • gram stain: negative
  • cell length: 0.4-10.0 µm
  • cell width: 0.1-0.3 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 24916
  • colony size: 1.0-2.0 mm
  • colony color: orange-yellow
  • colony shape: circular
  • incubation period: 5 days
  • medium used: MA (marine agar)

Culture and growth conditions

culture medium

  • @ref: 24916
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
24916positiveoptimum30mesophilic
24916positivegrowth10psychrophilic
24916nogrowth4psychrophilic
24916nogrowth35mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
24916positiveoptimum7.0-8.0
24916positivegrowth6
24916nogrowth5.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
24916aerobe
67771aerobe

spore formation

  • @ref: 24916
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
24916NaClpositivegrowth0.5-6.0 %(w/v)
24916NaCloptimum2 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2491630089acetate-assimilation
2491616150benzoate-assimilation
24916casein-hydrolysis
2491617057cellobiose-assimilation
2491616947citrate-assimilation
2491615824D-fructose-assimilation
2491612936D-galactose-assimilation
2491617634D-glucose-assimilation
2491665327D-xylose-assimilation
249164853esculin-hydrolysis
2491615740formate-assimilation
249165291gelatin-hydrolysis
2491617368hypoxanthine-hydrolysis
2491630849L-arabinose-assimilation
2491629985L-glutamate-assimilation
2491615589L-malate-assimilation
2491617895L-tyrosine-hydrolysis
2491617306maltose-assimilation
2491617632nitrate-reduction
2491615361pyruvate-assimilation
2491628017starch-hydrolysis
2491630031succinate-assimilation
2491617992sucrose-assimilation
2491616199urea-hydrolysis
2491615318xanthine-hydrolysis
2491616024D-mannose+assimilation
2491617814salicin+assimilation
2491627082trehalose+assimilation
2491653426tween 80+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitive
249163393carbenicillinyesyes
24916124991cefalotinyesyes
2491617698chloramphenicolyesyes
249166472lincomycinyesyes
2491628368novobiocinyesyes
2491616869oleandomycinyesyes
2491627902tetracyclineyesyes
2491628971ampicillinyesno
2491617833gentamicinyesno
249166104kanamycinyesno
249167507neomycinyesno
2491618208penicillin gyesno
249168309polymyxin byesno
2491617076streptomycinyesno

enzymes

@refvalueactivityec
24916acid phosphatase+3.1.3.2
24916alkaline phosphatase+3.1.3.1
24916alpha-chymotrypsin-3.4.21.1
24916alpha-fucosidase-3.2.1.51
24916alpha-galactosidase-3.2.1.22
24916alpha-glucosidase+3.2.1.20
24916alpha-mannosidase+3.2.1.24
24916beta-galactosidase+3.2.1.23
24916beta-glucosidase+3.2.1.21
24916beta-glucuronidase-3.2.1.31
24916catalase+1.11.1.6
24916cystine arylamidase+3.4.11.3
24916cytochrome oxidase+1.9.3.1
24916esterase (C 4)+
24916esterase lipase (C 8)+
24916leucine arylamidase+3.4.11.1
24916lipase (C 14)-
24916N-acetyl-beta-glucosaminidase+3.2.1.52
24916naphthol-AS-BI-phosphohydrolase+
24916trypsin-3.4.21.4
24916valine arylamidase+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture temperatureisolation procedure
24916tidal flat sedimentHampyeong on the Yellow SeaRepublic of KoreaKORAsiamarine agar 2216 (MA; BD Difco)25standard dilution plating technique
67771From a tidal flat in the Yellow Sea in South KoreaRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Tidal flat
#Environmental#Terrestrial#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_100542.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_141;96_1222;97_1664;98_68723;99_100542&stattab=map
  • Last taxonomy: Maribacter litorisediminis
  • 16S sequence: KX198138
  • Sequence Identity:
  • Total samples: 120
  • soil counts: 4
  • aquatic counts: 115
  • animal counts: 1

Sequence information

16S sequences

  • @ref: 24916
  • description: Maribacter sp. HPTF-2 16S ribosomal RNA gene, partial sequence
  • accession: KX198138
  • length: 1447
  • database: nuccore
  • NCBI tax ID: 1846261

GC content

  • @ref: 24916
  • GC-content: 38.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 24916

culture collection no.: KCTC 52251, NBRC 112297

literature

  • topic: Phylogeny
  • Pubmed-ID: 27470471
  • title: Maribacter litorisediminis sp. nov., isolated from a tidal flat.
  • authors: Park S, Jung YT, Won SM, Yoon JH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001341
  • year: 2016
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24916S. J. Park, Yong-Taek,Won, Sung-Min,Yoon, Jung-HoonMaribacter litorisediminis sp. nov., isolated from a tidal flat10.1099/ijsem.0.001341IJSEM 66: 4236-4242 201627470471
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/