Strain identifier

BacDive ID: 133125

Type strain: Yes

Species: Flavobacterium arcticum

Strain Designation: SM1502

NCBI tax ID(s): 1784713 (species)

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General

@ref: 25248

BacDive-ID: 133125

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Flavobacterium arcticum SM1502 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from Arctic surface seawater.

NCBI tax id

  • NCBI tax id: 1784713
  • Matching level: species

doi: 10.13145/bacdive133125.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium arcticum
  • full scientific name: Flavobacterium arcticum Li et al. 2017

@ref: 25248

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium arcticum

strain designation: SM1502

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
25248negative0.8-1.5 µm0.4-0.5 µmrod-shapedno
69480negative99.994

colony morphology

  • @ref: 25248
  • colony size: 2.0-3.0 mm
  • colony color: yellow
  • colony shape: circular
  • incubation period: 3 days
  • medium used: TYS agar

pigmentation

  • @ref: 25248
  • production: no
  • name: Flexirubin-type

Culture and growth conditions

culture medium

  • @ref: 25248
  • name: TYS agar
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25248positivegrowth10-40
25248positiveoptimum25mesophilic

culture pH

@refabilitytypepH
25248positivegrowth6.0-7.5
25248positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 25248
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.997

halophily

@refsaltgrowthtested relationconcentration
25248NaClpositivegrowth0-8.0 %(w/v)
25248NaCloptimum0 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2524817128adipate-assimilation
252482509agar-hydrolysis
2524817634D-glucose-assimilation
2524816899D-mannitol-assimilation
2524816024D-mannose-assimilation
2524827689decanoate-assimilation
2524816991dna-hydrolysis
25248egg yolk-hydrolysis
2524824265gluconate-assimilation
2524817234glucose-builds acid from
2524830849L-arabinose-assimilation
2524825115malate-assimilation
2524817306maltose-assimilation
25248506227N-acetylglucosamine-assimilation
2524818401phenylacetate-assimilation
2524853258sodium citrate-assimilation
2524828017starch-hydrolysis
2524853426tween 80-hydrolysis
25248casein+hydrolysis
252484853esculin+hydrolysis
2524817632nitrate+reduction
2524853424tween 20+hydrolysis
2524853423tween 40+hydrolysis
2524853425tween 60+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
2524828971ampicillinyesyes10 µg (disc)
2524817698chloramphenicolyesyes100 µg (disc)
2524818208penicillin gyesyes10 µg (disc)
2524827902tetracyclineyesyes30 µg (disc)
2524828001vancomycinyesyes30 µg (disc)
2524817833gentamicinyesyes10 µg (disc)
252486104kanamycinyesyes30 µg (disc)
252488309polymyxin byesyes300 Unit
2524817076streptomycinyesyes10

metabolite production

  • @ref: 25248
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
25248acid phosphatase+3.1.3.2
25248alkaline phosphatase+3.1.3.1
25248alpha-chymotrypsin-3.4.21.1
25248alpha-fucosidase-3.2.1.51
25248alpha-galactosidase-3.2.1.22
25248alpha-glucosidase-3.2.1.20
25248alpha-mannosidase-3.2.1.24
25248arginine dihydrolase-3.5.3.6
25248beta-galactosidase-3.2.1.23
25248beta-glucosidase-3.2.1.21
25248beta-glucuronidase-3.2.1.31
25248catalase+1.11.1.6
25248cystine arylamidase+3.4.11.3
25248cytochrome oxidase+1.9.3.1
25248esterase (C 4)+
25248esterase Lipase (C 8)+
25248gelatinase+
25248leucine arylamidase+3.4.11.1
25248lipase (C 14)-
25248N-acetyl-beta-glucosaminidase-3.2.1.52
25248naphthol-AS-BI-phosphohydrolase+
25248trypsin-3.4.21.4
25248urease-3.5.1.5
25248valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    25248C15:0 anteiso3.8
    25248C15:1 anteiso A0.7
    25248C13:1 at 12-130.7
    25248C15:09.1
    25248C15:1ω6c1.9
    25248C16:01.6
    25248C16:0 3OH1.2
    25248C16:1ω7c / iso15:0 2-OH4.6
    25248C17:1ω8c0.6
    25248C13:0 iso2.3
    25248C14:0 iso 3OH0.5
    25248C15:0 iso23.2
    25248C15:0 iso 3OH4
    25248C15:1 iso G10.9
    25248C16:0 iso1.7
    25248C16:0 iso 3OH1.6
    25248C16:1 iso H1
    25248C17:0 iso 3OH7.5
    25248C17:1 iso ω9c11.3
    25248Unknown ECL 11.5431.512
    25248Unknown ECL 13.5655.714
  • type of FA analysis: whole cell analysis
  • incubation medium: marine broth (MB)
  • incubation temperature: 25
  • incubation time: 1
  • software version: Sherlock 4.5
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

  • @ref: 25248
  • sample type: Arctic surface seawater
  • geographic location: Arctic seawater

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic
#Environmental#Aquatic#Surface water
#Condition#Psychrophilic (<10°C)
#Climate#Cold#Polar

Sequence information

16S sequences

  • @ref: 25248
  • description: 16S rRNA gene sequences
  • accession: KU529277
  • length: 1482
  • database: ena
  • NCBI tax ID: 1784713

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Flavobacterium arcticum SM1502GCA_003344925completencbi1784713
66792Flavobacterium arcticum KCTC 42668GCA_004634185contigncbi1784713
66792Flavobacterium arcticum strain KCTC 426681784713.5wgspatric1784713
66792Flavobacterium arcticum SM15022847339297completeimg1784713

GC content

  • @ref: 25248
  • GC-content: 37
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91.932yes
flagellatedno96.355yes
gram-positiveno98.834yes
anaerobicno99.133yes
aerobicyes90.484yes
halophileno88.421no
spore-formingno96.319no
glucose-utilyes81.034no
thermophileno98.055no
glucose-fermentno92.032no

External links

@ref: 25248

culture collection no.: KCTC 42668, CCTCC AB 2015346

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny28100315Flavobacterium arcticum sp. nov., isolated from Arctic seawater.Li DD, Liu C, Zhang YQ, Wang XJ, Wang N, Peng M, Song XY, Su HN, Zhang XY, Zhang YZ, Shi MInt J Syst Evol Microbiol10.1099/ijsem.0.0018042017Arctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny29485392Flavobacterium cyanobacteriorum sp. nov., isolated from cyanobacterial aggregates in a eutrophic lake.Cai H, Zeng Y, Wang Y, Cui H, Jiang HInt J Syst Evol Microbiol10.1099/ijsem.0.0026642018Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Lakes/*microbiology, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, *Water MicrobiologyTranscriptome
Phylogeny32568031Flavobacterium salilacus sp. nov., isolated from surface water of a hypersaline lake, and descriptions of Flavobacterium salilacus subsp. altitudinum subsp. nov. and Flavobacterium salilacus subsp. salilacus subsp. nov.Debnath SC, Chen C, Khan I, Wang WJ, Zheng DQ, Xu JZ, Wang PMInt J Syst Evol Microbiol10.1099/ijsem.0.0042812020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/isolation & purification, Lakes/*microbiology, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Saline Waters, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny35951659Flavobacterium litorale sp. nov., isolated from red alga.Muhammad N, Le Han H, Lee YJ, Ko J, Nguyen TTH, Kim SGInt J Syst Evol Microbiol10.1099/ijsem.0.0054582022Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Flavobacteriaceae/genetics, Flavobacterium, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhodophyta, Sequence Analysis, DNA, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25248D. D. L. Li, C.,Zhang, Y. Q.,Wang, X. J.,Wang, N.,Peng, M.,Song, X. Y.,Su, H. N.,Zhang, X. Y.,Zhang, Y. Z.,Shi, M.Flavobacterium arcticum sp. nov., isolated from Arctic seawater10.1099/ijsem.0.001804IJSEM 67: 1070-1074 201728100315
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1